PROSITE documentation PDOC00023

Hemopexin domain signature

Description:

Hemopexin is a serum glycoprotein that binds heme and transports it to the liver for breakdown and iron recovery, after which the free hemopexin returns to the circulation. Structurally hemopexin consists of two similar halves of approximately two hundred amino acid residues connected by a histidine-rich hinge region. Each half is itself formed by the repetition of a basic unit of some 35 to 45 residues. Hemopexin-like domains have been found [1,2] in two other types of proteins:

  • In vitronectin, a cell adhesion and spreading factor found in plasma and tissues. Vitronectin, like hemopexin, has two hemopexin-like domains.
  • In most members of the matrix metalloproteinases family (matrixins) (see <PDOC00129>): MMP-1, MMP-2, MMP-3, MMP-8, MMP-9, MMP-10, MMP-11, MMP-12, MMP-13, MMP-14, MMP-15, MMP-16, MMP-17, MMP-18, MMP-19, MMP-20, MMP-24, and MMP-25. These zinc endoproteases have a single hemopexin-like domain in their C-terminal section.

It is suggested that the hemopexin domain facilitates binding to a variety of molecules and proteins. The signature pattern for this type of domain has been derived from the best conserved region which is located at the beginning of the second repeat.

Last update:

April 2006 / Pattern revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

HEMOPEXIN, PS00024Hemopexin domain signature  (PATTERN)
Consensus pattern: [LIFAT]-{IL}-x(2)-W-x(2,3)-[PE]-x-{VF}-[LIVMFY]-[DENQS]-[STA]-[AV]-[LIVMFY]
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: 11
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Matching PDB structures: 1CK7 1FBL 1GEN 1GXD ... [ALL]

References:

1 AuthorsHunt L.T., Barker W.C., Chen H.R.
SourceProtein Seq. Data Anal. 1:21-26(1987).
2 AuthorsStanley K.K.
TitleHomology with hemopexin suggests a possible scavenging function for S-protein/vitronectin.
SourceFEBS Lett. 199:249-253(1986).
PubMed ID2422056

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