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| PROSITE documentation PDOC00050 |
Ribosomal protein L39e signature
Description:
A number of eukaryotic and archaebacterial ribosomal proteins can be grouped
on the basis of sequence similarities. One of these families consists of:
- Mammalian L39 [1].
- Plants L39.
- Yeast L46 [2].
- Archebacterial L39e [3].
These proteins are very basic. About 50 residues long, they are the smallest
proteins of eukaryotic-type ribosomes. As a signature pattern, we selected a
conserved region in the C-terminal section of these proteins.
Last update:
December 2004 / Pattern and text revised.
Technical section:
PROSITE method (with tools and information) covered by this documentation:
| RIBOSOMAL_L39E, PS00051; Ribosomal protein L39e signature (PATTERN) |
| Consensus pattern: |
[KRM]-[PTKS]-x(3)-[LIVMFG]-x(2)-[NHS]-x(3)-R-[DNHY]-W-R-[RS]
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| Sequences known to belong to this class detected by the pattern: |
ALL |
| Other sequence(s) detected in Swiss-Prot: |
NONE |
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| Matching PDB structures:
1YJ9 3IZS 3O58 3O5H ... [ALL] |
References:
| 1 |
Authors | Lin A., McNally J., Wool I.G. |
| Title | The primary structure of rat liver ribosomal protein L39. |
| Source | J. Biol. Chem. 259:487-490(1984). |
| PubMed ID | 6706949 |
| 2 |
Authors | Leer R.J., van Raamsdonk-Duin M.M.C., Kraakman P., Mager W.H., Planta R.J. |
| Title | The genes for yeast ribosomal proteins S24 and L46 are adjacent and divergently transcribed. |
| Source | Nucleic Acids Res. 13:701-709(1985). |
| PubMed ID | 4000930 |
| 3 |
Authors | Ramirez C., Louie K.A., Matheson A.T. |
| Title | A small basic ribosomal protein in Sulfolobus solfataricus equivalent to L46 in yeast: structure of the protein and its gene. |
| Source | FEBS Lett. 250:416-418(1989). |
| PubMed ID | 2502431 |
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