 |
|
| PROSITE documentation PDOC00051 |
Ribosomal protein S7 signature
Description:
Ribosomal protein S7 is one of the proteins from the small ribosomal subunit.
In Escherichia coli, S7 is known to bind directly to part of the 3'end of 16S
ribosomal RNA. It belongs to a family of ribosomal proteins which, on the
basis of sequence similarities [1,2,3], groups:
- Eubacterial S7.
- Algal and plant chloroplast S7.
- Cyanelle S7.
- Archaebacterial S7.
- Plant mitochondrial S7.
- Mammalian S5.
- Plant S5.
- Caenorhabditis elegans S5 (T05E11.1).
As a signature pattern, we selected the best conserved region located in the
N-terminal section of these proteins.
Last update:
July 1999 / Pattern and text revised.
Technical section:
PROSITE method (with tools and information) covered by this documentation:
| RIBOSOMAL_S7, PS00052; Ribosomal protein S7 signature (PATTERN) |
| Consensus pattern: |
[DENSK]-x-[LIVMDET]-x(3)-[LIVMFTA](2)-x(6)-G-K-[KR]-x(5)-[LIVMF]-[LIVMFC]-x(2)-[STAC]
|
| Sequences known to belong to this class detected by the pattern: |
ALL, except for Thermococcus celer S7 and Acanthamoeba castellanii mitochondrial S7 |
| Other sequence(s) detected in Swiss-Prot: |
NONE |
|
|
|
| Matching PDB structures:
1DV4 1EG0 1FJG 1FKA ... [ALL] |
References:
| 1 |
Authors | Klussmann S., Franke P., Bergmann U., Kostka S., Wittmann-Liebold B. |
| Title | N-terminal modification and amino-acid sequence of the ribosomal protein HmaS7 from Haloarcula marismortui and homology studies to other ribosomal proteins. |
| Source | Biol. Chem. Hoppe-Seyler 374:305-312(1993). |
| PubMed ID | 8338632 |
| 2 |
Authors | Otaka E., Hashimoto T., Mizuta K. |
| Source | Protein Seq. Data Anal. 5:285-300(1993). |
| 3 |
Authors | Ignatovich O., Cooper M., Kulesza H.M., Beggs J.D. |
| Title | Cloning and characterisation of the gene encoding the ribosomal protein S5 (also known as rp14, S2, YS8) of Saccharomyces cerevisiae. |
| Source | Nucleic Acids Res. 23:4616-4619(1995). |
| PubMed ID | 8524651 |
Copyright:
PROSITE is copyright. It is produced by the Swiss Institute of
Bioinformatics (SIB). There are no restrictions on its use by non-profit
institutions as long as its content is in no way modified. Usage by and
for commercial entities requires a license agreement. For information
about the licensing scheme send an email to license@isb-sib.ch or
see: http://www.expasy.org/prosite/prosite_license.htm.
Miscellaneous:
View entry in original PROSITE document format
View entry in raw text format (no links)