PROSITE documentation PDOC00103

Phosphagen kinase active site signature and N- and C-terminal domain profiles

Description

Phosphagen (guanidino) kinases, including creatine kinase (CK), arginine kinase (AK), taurocyamine kinase (TK), lombricine kinase (LK), glycocyamine kinase (GK), and hypotaurocyamine kinase (HTK), are enzymes that catalyze the reversible transfer of the γ-phosphoryl group of adenosine triphosphate (ATP) to naturally occuring guanidino compounds such as creatine, arginine, yelding adenosine diphosphate (ADP) and a phosphorylated guanidine typically referred to as phosphagen (phosphocreatine, phosphoarginine and etc). Members of this enzyme family play a key role in animals as ATP-buffering systems in cells that display high and variable rates of ATP turnover. Phosphagen kinases have been found in all animal species and in some protozoa, such as trypanosomes, choanoflagellates, and the ciliates, Paramecium tetraurelia, Paramecium caudatum, and Tetrahymena. Eukaryotic phosphagen kinases consist of a small, ~100-residue, α-helical N-terminal domain and a larger, 250+-residue, C-terminal α/β saddle domain in which many key residues involved in catalysis are found (see <PDB:3L2E>). The N-terminal domain undergoes significant conformational movements during catalysis, closing down on the catalytic pocket. It is involved in dimer formation. Bacterial phosphagen kinases have the large C-terminal domain seen in eukaryotic phosphagen kinases but lack the N-terminal domain [1,2,3,4].

A cysteine residue is implicated in the catalytic activity of these enzymes. The region around this active site residue is highly conserved and can be used as a signature pattern. We also developed two profiles, which cover respectively the entire phosphagen kinase N- and C-terminal domains.

Last update:

December 2010 / Text revised; profiles added.

Technical section

PROSITE methods (with tools and information) covered by this documentation:

PHOSPHAGEN_KINASE_C, PS51510Phosphagen kinase C-terminal domain profile  (MATRIX)
Sequences known to belong to this class detected by the profile: ALL
Other sequence(s) detected in Swiss-Prot: NONE.
Domain architecture view of Swiss-Prot proteins matching PS51510
PS51510
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS51510
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS51510
Scan Swiss-Prot/TrEMBL entries against PS51510
view ligand binding statistics
Matching PDB structures: 1BG0 1CRK 1G0W 1I0E ... [ALL]
PHOSPHAGEN_KINASE_N, PS51509Phosphagen kinase N-terminal domain profile  (MATRIX)
Sequences known to belong to this class detected by the profile: ALL
Other sequence(s) detected in Swiss-Prot: NONE.
Domain architecture view of Swiss-Prot proteins matching PS51509
PS51509
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS51509
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS51509
Scan Swiss-Prot/TrEMBL entries against PS51509
view ligand binding statistics
Matching PDB structures: 1BG0 1CRK 1G0W 1I0E ... [ALL]
PHOSPHAGEN_KINASE, PS00112Phosphagen kinase active site signature  (PATTERN)
Consensus pattern: C-P-x(0,1)-[ST]-N-[ILV]-G-T
C is the active site residue
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE.
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00112
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00112
Scan Swiss-Prot/TrEMBL entries against PS00112
view ligand binding statistics
Matching PDB structures: 1BG0 1CRK 1G0W 1I0E ... [ALL]

References

1 Authors Tanaka K., Uda K., Shimada M., Takahashi K., Gamou S., Ellington W.R., Suzuki T.
Title Evolution of the cytoplasmic and mitochondrial phosphagen kinases unique to annelid groups.
Source J. Mol. Evol. 65:616-625(2007).
PubMed ID 17932618
DOI 10.1007/s00239-007-9046-4
2 Authors Conejo M., Bertin M., Pomponi S.A., Ellington W.R.
Title The early evolution of the phosphagen kinases--insights from choanoflagellate and poriferan arginine kinases.
Source J. Mol. Evol. 66:11-20(2008).
PubMed ID 18064398
DOI 10.1007/s00239-007-9058-0
3 Authors Andrews L.D., Graham J., Snider M.J., Fraga D.
Title Characterization of a novel bacterial arginine kinase from Desulfotalea psychrophila.
Source Comp. Biochem. Physiol. 150:312-319(2008).
PubMed ID 18499493
DOI 10.1016/j.cbpb.2008.03.017
4 Authors Lim K., Pullalarevu S., Surabian K.T., Howard A., Suzuki T., Moult J., Herzberg O.
Title Structural basis for the mechanism and substrate specificity of glycocyamine kinase, a phosphagen kinase family member.
Source Biochemistry 49:2031-2041(2010).
PubMed ID 20121101
DOI 10.1021/bi9020988

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