PROSITE documentation PDOC00149

Serine/threonine dehydratases pyridoxal-phosphate attachment site

Description

Serine and threonine dehydratases [1,2] are functionally and structurally related pyridoxal-phosphate dependent enzymes:

  • L-serine dehydratase (EC 4.3.1.17) and D-serine dehydratase (EC 4.3.1.18) catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate.
  • Threonine dehydratase (EC 4.3.1.19) (TDH) catalyzes the dehydratation of threonine into α-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism.

Threonine synthase (EC 4.2.3.1) is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown [3] that threonine synthase is distantly related to the serine/ threonine dehydratases.

In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. The sequence around this residue is sufficiently conserved to allow the derivation of a pattern specific to serine/threonine dehydratases and threonine synthases.

Note:

Some bacterial L-serine dehydratases - such as those from Escherichia coli - are iron-sulfur proteins [4] and do not belong to this family.

Last update:

December 2004 / Pattern and text revised.

Technical section

PROSITE method (with tools and information) covered by this documentation:

DEHYDRATASE_SER_THR, PS00165Serine/threonine dehydratases pyridoxal-phosphate attachment site  (PATTERN)
Consensus pattern: [DESH]-x(4,5)-[STVG]-{EVKD}-[AS]-[FYI]-K-[DLIFSA]-[RLVMF]-[GA]-[LIVMGA]
The K is the pyridoxal-P attachment site
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: 17.
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Matching PDB structures: 1KL7 1P5J 1PWE 1PWH ... [ALL]

References

1 Authors Ogawa H., Gomi T., Konishi K., Date T., Nakashima H., Nose K., Matsuda Y., Peraino C., Pitot H.C., Fujioka M.
Title Human liver serine dehydratase. cDNA cloning and sequence homology with hydroxyamino acid dehydratases from other sources.
Source J. Biol. Chem. 264:15818-15823(1989).
PubMed ID 2674117
2 Authors Datta P., Goss T.J., Omnaas J.R., Patil R.V.
Title Covalent structure of biodegradative threonine dehydratase of Escherichia coli: homology with other dehydratases.
Source Proc. Natl. Acad. Sci. U.S.A. 84:393-397(1987).
PubMed ID 3540965
3 Authors Parsot C.
Title Evolution of biosynthetic pathways: a common ancestor for threonine synthase, threonine dehydratase and D-serine dehydratase.
Source EMBO J. 5:3013-3019(1986).
PubMed ID 3098560
4 Authors Grabowski R., Hofmeister A.E.M., Buckel W.
Title Bacterial L-serine dehydratases: a new family of enzymes containing iron-sulfur clusters.
Source Trends Biochem. Sci. 18:297-300(1993).
PubMed ID 8236444

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