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| PROSITE documentation PDOC00248 |
Shiga/ricin ribosomal inactivating toxins active site signature
Description:
A number of bacterial and plant toxins act by inhibiting protein synthesis in
eukaryotic cells. The toxins of the Shiga and ricin family inactivate 60S
ribosomal subunits by an N-glycosidic cleavage which releases a specific
adenine base from the sugar-phosphate backbone of 28S rRNA [1,2,3]. The toxins
which are known to function in this manner are:
- Shiga toxin from Shigella dysenteriae [4]. This toxin is composed of one
copy of an enzymatically active A subunit and five copies of a B subunit
responsible for binding the toxin complex to specific receptors on the
target cell surface.
- Shiga-like toxins (SLT) are a group of Escherichia coli toxins very
similar in their structure and properties to Shiga toxin. The sequence of
two types of these toxins, SLT-1 [5] and SLT-2 [6], is known.
- Ricin, a potent toxin from castor bean seeds. Ricin consists of two
glycosylated chains linked by a disulfide bond. The A chain is
enzymatically active. The B chain is a lectin with a binding preference for
galactosides. Both chains are encoded by a single polypeptidic precursor.
Ricin is classified as a type-II ribosome-inactivating protein (RIP); other
members of this family are agglutinin, also from castor bean, and abrin
from the seeds of the bean Abrus precatorius [7].
- Single chain ribosome-inactivating proteins (type-I RIP) from plants.
Examples of such proteins are: barley protein synthesis inhibitors I and
II, mongolian snake-gourd trichosanthin, sponge gourd luffin-A and -B,
garden four-o'clock MAP, common pokeberry PAP-S and soapwort saporin-6 [7].
All these toxins are structurally related. A conserved glutamic residue has
been implicated [8] in the catalytic mechanism; it is located near a conserved
arginine which also plays a role in catalysis [9]. The signature we developed
for these proteins includes these catalytic residues.
Last update:
December 2004 / Pattern and text revised.
Technical section:
PROSITE method (with tools and information) covered by this documentation:
| SHIGA_RICIN, PS00275; Shiga/ricin ribosomal inactivating toxins active site signature (PATTERN) |
| Consensus pattern: |
[LIVMA]-x-[LIVMSTA](2)-x-E-[SAGV]-[STAL]-R-[FY]-[RKNQST]-x-[LIVM]-[EQS]-x(2)-[LIVMF]
E and R are active site residues |
| Sequences known to belong to this class detected by the pattern: |
ALL |
| Other sequence(s) detected in Swiss-Prot: |
NONE |
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| Matching PDB structures:
1ABR 1AHA 1AHB 1AHC ... [ALL] |
References:
| 1 |
Authors | Endo Y., Tsurugi K., Yutsudo T., Takeda Y., Ogasawara T., Igarashi K. |
| Title | Site of action of a Vero toxin (VT2) from Escherichia coli O157:H7 and of Shiga toxin on eukaryotic ribosomes. RNA N-glycosidase activity of the toxins. |
| Source | Eur. J. Biochem. 171:45-50(1988). |
| PubMed ID | 3276522 |
| 2 |
Authors | May M.J., Hartley M.R., Roberts L.M., Krieg P.A., Osborn R.W., Lord J.M. |
| Title | Ribosome inactivation by ricin A chain: a sensitive method to assess the activity of wild-type and mutant polypeptides. |
| Source | EMBO J. 8:301-308(1989). |
| PubMed ID | 2714255 |
| 3 |
Authors | Funatsu G., Islam M.R., Minami Y., Sung-Sil K., Kimura M. |
| Title | Conserved amino acid residues in ribosome-inactivating proteins from plants. |
| Source | Biochimie 73:1157-1161(1991). |
| PubMed ID | 1742358 |
| 4 |
Authors | Strockbine N.A., Jackson M.P., Sung L.M., Holmes R.K., O'Brien A.D. |
| Title | Cloning and sequencing of the genes for Shiga toxin from Shigella dysenteriae type 1. |
| Source | J. Bacteriol. 170:1116-1122(1988). |
| PubMed ID | 2830229 |
| 5 |
Authors | Calderwood S.B., Auclair F., Donohue-Rolfe A., Keusch G.T., Mekalanos J.J. |
| Title | Nucleotide sequence of the Shiga-like toxin genes of Escherichia coli. |
| Source | Proc. Natl. Acad. Sci. U.S.A. 84:4364-4368(1987). |
| PubMed ID | 3299365 |
| 6 |
Authors | Jackson M.P., Neill R.J., O'Brien A.D., Holmes R.K., Newland J.W. |
| Source | FEMS Microbiol. Lett. 44:109-114(1987). |
| 7 |
Authors | Barbieri L., Battelli M.G., Stirpe F. |
| Title | Ribosome-inactivating proteins from plants. |
| Source | Biochim. Biophys. Acta 1154:237-282(1993). |
| PubMed ID | 8280743 |
| 8 |
Authors | Hovde C.J., Calderwood S.B., Mekalanos J.J., Collier R.J. |
| Title | Evidence that glutamic acid 167 is an active-site residue of Shiga-like toxin I. |
| Source | Proc. Natl. Acad. Sci. U.S.A. 85:2568-2572(1988). |
| PubMed ID | 3357883 |
| 9 |
Authors | Monzingo A.F., Collins E.J., Ernst S.R., Irvin J.D., Robertus J.D. |
| Title | The 2.5 A structure of pokeweed antiviral protein. |
| Source | J. Mol. Biol. 233:705-715(1993). |
| PubMed ID | 8411176 |
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