PROSITE documentation PDOC00248

Shiga/ricin ribosomal inactivating toxins active site signature

Description:

A number of bacterial and plant toxins act by inhibiting protein synthesis in eukaryotic cells. The toxins of the Shiga and ricin family inactivate 60S ribosomal subunits by an N-glycosidic cleavage which releases a specific adenine base from the sugar-phosphate backbone of 28S rRNA [1,2,3]. The toxins which are known to function in this manner are:

  • Shiga toxin from Shigella dysenteriae [4]. This toxin is composed of one copy of an enzymatically active A subunit and five copies of a B subunit responsible for binding the toxin complex to specific receptors on the target cell surface.
  • Shiga-like toxins (SLT) are a group of Escherichia coli toxins very similar in their structure and properties to Shiga toxin. The sequence of two types of these toxins, SLT-1 [5] and SLT-2 [6], is known.
  • Ricin, a potent toxin from castor bean seeds. Ricin consists of two glycosylated chains linked by a disulfide bond. The A chain is enzymatically active. The B chain is a lectin with a binding preference for galactosides. Both chains are encoded by a single polypeptidic precursor. Ricin is classified as a type-II ribosome-inactivating protein (RIP); other members of this family are agglutinin, also from castor bean, and abrin from the seeds of the bean Abrus precatorius [7].
  • Single chain ribosome-inactivating proteins (type-I RIP) from plants. Examples of such proteins are: barley protein synthesis inhibitors I and II, mongolian snake-gourd trichosanthin, sponge gourd luffin-A and -B, garden four-o'clock MAP, common pokeberry PAP-S and soapwort saporin-6 [7].

All these toxins are structurally related. A conserved glutamic residue has been implicated [8] in the catalytic mechanism; it is located near a conserved arginine which also plays a role in catalysis [9]. The signature we developed for these proteins includes these catalytic residues.

Last update:

December 2004 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

SHIGA_RICIN, PS00275Shiga/ricin ribosomal inactivating toxins active site signature  (PATTERN)
Consensus pattern: [LIVMA]-x-[LIVMSTA](2)-x-E-[SAGV]-[STAL]-R-[FY]-[RKNQST]-x-[LIVM]-[EQS]-x(2)-[LIVMF]
E and R are active site residues
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
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Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00275
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00275
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Matching PDB structures: 1ABR 1AHA 1AHB 1AHC ... [ALL]

References:

1 AuthorsEndo Y., Tsurugi K., Yutsudo T., Takeda Y., Ogasawara T., Igarashi K.
TitleSite of action of a Vero toxin (VT2) from Escherichia coli O157:H7 and of Shiga toxin on eukaryotic ribosomes. RNA N-glycosidase activity of the toxins.
SourceEur. J. Biochem. 171:45-50(1988).
PubMed ID3276522
2 AuthorsMay M.J., Hartley M.R., Roberts L.M., Krieg P.A., Osborn R.W., Lord J.M.
TitleRibosome inactivation by ricin A chain: a sensitive method to assess the activity of wild-type and mutant polypeptides.
SourceEMBO J. 8:301-308(1989).
PubMed ID2714255
3 AuthorsFunatsu G., Islam M.R., Minami Y., Sung-Sil K., Kimura M.
TitleConserved amino acid residues in ribosome-inactivating proteins from plants.
SourceBiochimie 73:1157-1161(1991).
PubMed ID1742358
4 AuthorsStrockbine N.A., Jackson M.P., Sung L.M., Holmes R.K., O'Brien A.D.
TitleCloning and sequencing of the genes for Shiga toxin from Shigella dysenteriae type 1.
SourceJ. Bacteriol. 170:1116-1122(1988).
PubMed ID2830229
5 AuthorsCalderwood S.B., Auclair F., Donohue-Rolfe A., Keusch G.T., Mekalanos J.J.
TitleNucleotide sequence of the Shiga-like toxin genes of Escherichia coli.
SourceProc. Natl. Acad. Sci. U.S.A. 84:4364-4368(1987).
PubMed ID3299365
6 AuthorsJackson M.P., Neill R.J., O'Brien A.D., Holmes R.K., Newland J.W.
SourceFEMS Microbiol. Lett. 44:109-114(1987).
7 AuthorsBarbieri L., Battelli M.G., Stirpe F.
TitleRibosome-inactivating proteins from plants.
SourceBiochim. Biophys. Acta 1154:237-282(1993).
PubMed ID8280743
8 AuthorsHovde C.J., Calderwood S.B., Mekalanos J.J., Collier R.J.
TitleEvidence that glutamic acid 167 is an active-site residue of Shiga-like toxin I.
SourceProc. Natl. Acad. Sci. U.S.A. 85:2568-2572(1988).
PubMed ID3357883
9 AuthorsMonzingo A.F., Collins E.J., Ernst S.R., Irvin J.D., Robertus J.D.
TitleThe 2.5 A structure of pokeweed antiviral protein.
SourceJ. Mol. Biol. 233:705-715(1993).
PubMed ID8411176

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