PROSITE documentation PDOC00332

Alanine racemase pyridoxal-phosphate attachment site

Description:

Alanine racemase (EC 5.1.1.1) [1] catalyzes the pyridoxal-dependent conversion of L-alanine into D-alanine, a key building block of bacterial peptidoglycan. In bacteria such as Escherichia coli or Salmonella typhimurium, there are two forms of alanine racemase: a biosynthetic form (alr) required for cell wall formation and a form (dadB) that functions in L-alanine catabolism. In contrast to dadB and alr which are monomeric enzymes, the alanine racemase of Bacillaceae are homodimers.

The pyridoxal-phosphate group of alanine racemase is attached to a lysine residue. The sequence around this residue is highly conserved in all forms of the enzyme.

Last update:

February 2002 / Pattern revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

ALANINE_RACEMASE, PS00395Alanine racemase pyridoxal-phosphate attachment site  (PATTERN)
Consensus pattern: [SACVLG]-[AIPTV]-x(0,1)-K-[ADGS]-[DEN]-[GA]-Y-G-[HACILN]-[GD]
K is the pyridoxal-P attachment site
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
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Matching PDB structures: 1BD0 1EPV 1FTX 1L6F ... [ALL]

Reference:

1 AuthorsHayashi H., Wada H., Yoshimura T., Esaki N., Soda K.
TitleRecent topics in pyridoxal 5'-phosphate enzyme studies.
SourceAnnu. Rev. Biochem. 59:87-110(1990).
PubMed ID2197992
DOI10.1146/annurev.bi.59.070190.000511

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