PROSITE documentation PDOC00362

Dynamin family signature

Description:

Dynamin [1,2] is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles and which is able to bind and hydrolyze GTP. Dynamin is structurally related to the following proteins:

  • Drosophila shibire protein (gene shi) [3]. Shibire is, very probably, the Drosophila cognate of mammalian dynamin. It seems to provide the motor for vesicular transport during endocytosis.
  • Yeast vacuolar sorting protein VPS1 (or SPO15) [4], a protein which could also be involved in microtubule-associated motility.
  • Yeast protein MGM1 [5], which is required for mitochondrial genome maintenance.
  • Yeast protein DNM1, which is involved in endocytosis.
  • Interferon induced Mx proteins [6,7]. Interferon α or β induce the synthesis of a family of closely related proteins. Most of these proteins are known to confer resistance to influenza viruses and/or rhabdoviruses on transfected mammalian cell in culture.

The three motifs found in all GTP-binding proteins are located in the N-terminal part of these proteins. The signature pattern that we developed for these proteins is based on a highly conserved region downstream of the ATP/GTP-binding motif 'A' (P-loop) (see <PDOC00017>).

Last update:

April 2006 / Pattern revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

DYNAMIN, PS00410Dynamin family signature  (PATTERN)
Consensus pattern: L-P-[RKT]-[GD]-[STNKEA]-[GND]-[LIVMG]-[VICA]-T-R
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
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Matching PDB structures: 2AKA 2X2E 2X2F 3ZVR ... [ALL]

References:

1 AuthorsVallee R.B., Shpetner H.S.
TitleMotor proteins of cytoplasmic microtubules.
SourceAnnu. Rev. Biochem. 59:909-932(1990).
PubMed ID2142876
DOI10.1146/annurev.bi.59.070190.004401
2 AuthorsObar R.A., Collins C.A., Hammarback J.A., Shpetner H.S., Vallee R.B.
TitleMolecular cloning of the microtubule-associated mechanochemical enzyme dynamin reveals homology with a new family of GTP-binding proteins.
SourceNature 347:256-261(1990).
PubMed ID2144893
DOI10.1038/347256a0
3 Authorsvan der Bliek A., Meyerowitz E.M.
SourceNature 351:411-414(1991).
4 AuthorsRothman J.H., Raymond C.K., Gilbert T., O'Hara P.J., Stevens T.H.
TitleA putative GTP binding protein homologous to interferon-inducible Mx proteins performs an essential function in yeast protein sorting.
SourceCell 61:1063-1074(1990).
PubMed ID2112425
5 AuthorsJones B.A., Fangman W.L.
TitleMitochondrial DNA maintenance in yeast requires a protein containing a region related to the GTP-binding domain of dynamin.
SourceGenes Dev. 6:380-389(1992).
PubMed ID1532158
6 AuthorsArnheiter H., Meier E.
TitleMx proteins: antiviral proteins by chance or by necessity?
SourceNew Biol. 2:851-857(1990).
PubMed ID1706623
7 AuthorsStaeheli P., Pitossi F., Pavlovic J.
TitleMx proteins: GTPases with antiviral activity.
SourceTrends Cell Biol. 3:268-272(1993).
PubMed ID14731745

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