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| PROSITE documentation PDOC00412 |
DNA polymerase family A signature
Description:
Replicative DNA polymerases (EC 2.7.7.7) are the key enzymes catalyzing the
accurate replication of DNA. They require either a small RNA molecule or a
protein as a primer for the de novo synthesis of a DNA chain. On the basis of
sequence similarities a number of DNA polymerases have been grouped together
[1,2,3] under the designation of DNA polymerase family A. The polymerases that
belong to this family are listed below.
- Escherichia coli and various other bacterial polymerase I (gene polA).
- Thermus aquaticus Taq polymerase.
- Bacteriophage sp01 polymerase.
- Bacteriophage sp02 polymerase.
- Bacteriophage T5 polymerase.
- Bacteriophage T7 polymerase.
- Mycobacteriophage L5 polymerase.
- Yeast mitochondrial polymerase γ (gene MIP1).
Five regions of similarity are found in all the above polymerases. One of
these conserved regions, known as 'motif B' [1], is located in a domain which,
in Escherichia coli polA, has been shown to bind deoxynucleotide triphosphate
substrates; it contains a conserved tyrosine which has been shown, by photo-affinity labelling, to be in the active site; a conserved lysine, also part of
this motif, can be chemically labelled, using pyridoxal phosphate. We use this
conserved region as a signature for this family of DNA polymerases.
Last update:
November 1995 / Pattern and text revised.
Technical section:
PROSITE method (with tools and information) covered by this documentation:
| DNA_POLYMERASE_A, PS00447; DNA polymerase family A signature (PATTERN) |
| Consensus pattern: |
R-x(2)-[GSAV]-K-x(3)-[LIVMFY]-[AGQ]-x(2)-Y-x(2)-[GS]-x(3)-[LIVMA]
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| Sequences known to belong to this class detected by the pattern: |
ALL |
| Other sequence(s) detected in Swiss-Prot: |
2 |
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| Matching PDB structures:
1BGX 1D8Y 1D9D 1D9F ... [ALL] |
References:
| 1 |
Authors | Delarue M., Poch O., Tordo N., Moras D., Argos P. |
| Title | An attempt to unify the structure of polymerases. |
| Source | Protein Eng. 3:461-467(1990). |
| PubMed ID | 2196557 |
| 2 |
Authors | Ito J., Braithwaite D.K. |
| Title | Compilation and alignment of DNA polymerase sequences. |
| Source | Nucleic Acids Res. 19:4045-4057(1991). |
| PubMed ID | 1870963 |
| 3 |
Authors | Braithwaite D.K., Ito J. |
| Title | Compilation, alignment, and phylogenetic relationships of DNA polymerases. |
| Source | Nucleic Acids Res. 21:787-802(1993). |
| PubMed ID | 8451181 |
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