 |
|
| PROSITE documentation PDOC00452 |
DNA polymerase family X signature
Description:
DNA polymerases (EC 2.7.7.7) can be classified, on the basis of sequence
similarity [1], into at least four different groups: A, B, C and X. DNA
polymerases that belong to family X are listed below [2]:
- Vertebrate polymerase β, involved in DNA repair.
- Yeast polymerase IV (POL4) [3], an enzyme with similar characteristics to
that of the mammalian polymerase β.
- Terminal deoxynucleotidyltransferase (TdT) (EC 2.7.7.31). TdT catalyzes
the elongation of polydeoxynucleotide chains by terminal addition. One of
the functions of this enzyme is the addition of nucleotides at the junction
of rearranged Ig heavy chain and T cell receptor gene segments during the
maturation of B and T cells.
- African Swine Fever virus protein O174L [4].
- Fission yeast hypothetical protein SpAC2F7.06c.
These enzymes are small (about 40 Kd) compared with other polymerases and
their reaction mechanism operates via a distributive mode, i.e. they
dissociate from the template-primer after addition of each nucleotide.
As a signature pattern for this family of DNA polymerases, we selected a
highly conserved region that contains a conserved arginine and two conserved
aspartic acid residues. The latter together with the arginine have been shown
[5] to be involved in primer binding in polymerase β.
Last update:
May 2004 / Text revised.
Technical section:
PROSITE method (with tools and information) covered by this documentation:
| DNA_POLYMERASE_X, PS00522; DNA polymerase family X signature (PATTERN) |
| Consensus pattern: |
G-[SG]-[LFY]-x-R-[GE]-x(3)-[SGCL]-x-D-[LIVM]-D-[LIVMFY](3)-x(2)-[SAP]
The 2 D's and the R are involved in ssDNA binding |
| Sequences known to belong to this class detected by the pattern: |
ALL |
| Other sequence(s) detected in Swiss-Prot: |
NONE |
|
|
|
| Matching PDB structures:
1BPB 1BPD 1BPE 1BPX ... [ALL] |
References:
| 1 |
Authors | Ito J., Braithwaite D.K. |
| Title | Compilation and alignment of DNA polymerase sequences. |
| Source | Nucleic Acids Res. 19:4045-4057(1991). |
| PubMed ID | 1870963 |
| 2 |
Authors | Matsukage A., Nishikawa K., Ooi T., Seto Y., Yamaguchi M. |
| Title | Homology between mammalian DNA polymerase beta and terminal deoxynucleotidyltransferase. |
| Source | J. Biol. Chem. 262:8960-8962(1987). |
| PubMed ID | 3597402 |
| 3 |
Authors | Prasad R., Widen S.G., Singhal R.K., Watkins J., Prakash L., Wilson S.H. |
| Title | Yeast open reading frame YCR14C encodes a DNA beta-polymerase-like enzyme. |
| Source | Nucleic Acids Res. 21:5301-5307(1993). |
| PubMed ID | 8265341 |
| 4 |
Authors | Yanez R.J., Rodriguez J.M., Nogal M.L., Yuste L., Enriquez C., Rodriguez J.F., Vinuela E. |
| Title | Analysis of the complete nucleotide sequence of African swine fever virus. |
| Source | Virology 208:249-278(1995). |
| PubMed ID | 11831707 |
| 5 |
Authors | Date T., Yamamoto S., Tanihara K., Nishimoto Y., Matsukage A. |
| Title | Aspartic acid residues at positions 190 and 192 of rat DNA polymerase beta are involved in primer binding. |
| Source | Biochemistry 30:5286-5292(1991). |
| PubMed ID | 2036395 |
Copyright:
PROSITE is copyright. It is produced by the Swiss Institute of
Bioinformatics (SIB). There are no restrictions on its use by non-profit
institutions as long as its content is in no way modified. Usage by and
for commercial entities requires a license agreement. For information
about the licensing scheme send an email to license@isb-sib.ch or
see: http://www.expasy.org/prosite/prosite_license.htm.
Miscellaneous:
View entry in original PROSITE document format
View entry in raw text format (no links)