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PROSITE documentation PDOC00455

Ribosomal protein L19e signature

Description:

A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of:

  • Mammalian ribosomal protein L19 [1].
  • Drosophila ribosomal protein L19 [2].
  • Slime mold (D. discoideum) vegetative specific protein V14 [3].
  • Yeast ribosomal protein L19 (YL14).
  • Archebacterial ribosomal protein L19E.

These proteins have 148 to 203 amino-acid residues. As a signature pattern, we selected a stretch of about 20 residues in the N-terminal part of these proteins.

Last update:

December 2004 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_L19E, PS00526; Ribosomal protein L19e signature  (PATTERN)
Consensus pattern: Q-[KR]-R-[LIVM]-x-[SA]-x(4)-[CV]-G-x(3)-[IV]-[WK]-[LIVF]-[DNSV]-[PE]
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00526
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00526
• Scan Swiss-Prot/TrEMBL entries against PS00526
• view ligand binding statistics
Matching PDB structures: 1FFK 1JJ2 1K5Y 1K73 ... [ALL]

References:

1 AuthorsChan Y.-L., Lin A., McNally J., Peleg D., Meyuhas O., Wool I.G.
TitleThe primary structure of rat ribosomal protein L19. A determination from the sequence of nucleotides in a cDNA and from the sequence of amino acids in the protein.
SourceJ. Biol. Chem. 262:1111-1115(1987).
PubMed ID3542997
2 AuthorsHart K., Klein T., Wilcox M.
TitleA Minute encoding a ribosomal protein enhances wing morphogenesis mutants.
SourceMech. Dev. 43:101-110(1993).
PubMed ID8297785
3 AuthorsSingleton C.K., Manning S.S., Ken R.
TitlePrimary structure and regulation of vegetative specific genes of Dictyostelium discoideum.
SourceNucleic Acids Res. 17:9679-9692(1989).
PubMed ID2602140

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