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PROSITE documentation PDOC00501

Ribosomal protein L29 signature

Description:

Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins which, on the basis of sequence similarities [1], groups:

  • Eubacterial L29.
  • Red algal L29.
  • Archaebacterial L29.
  • Mammalian L35
  • Caenorhabditis elegans L35 (ZK652.4).
  • Yeast L35.

L29 is a protein of 63 to 138 amino-acid residues. As a signature pattern, we selected a conserved region located in the central section of L29.

Last update:

April 2006 / Pattern revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_L29, PS00579; Ribosomal protein L29 signature  (PATTERN)
Consensus pattern: [KNQS]-[PSTLNH]-{D}-{F}-[LIVMFA]-[KRGSADN]-x-[LIVYSTA]-[KR]-[KRHQS]-[DESTANQRL]-[LIV]-A-[KRCQVT]-[LIVMA]
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: 2
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00579
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00579
• Scan Swiss-Prot/TrEMBL entries against PS00579
• view ligand binding statistics
Matching PDB structures: 1FFK 1GIY 1JJ2 1K5Y ... [ALL]

Reference:

1 AuthorsOtaka E., Hashimoto T., Mizuta K.
SourceProtein Seq. Data Anal. 5:285-300(1993).

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