 |
|
| PROSITE documentation PDOC00518 |
Aminotransferases class-II pyridoxal-phosphate attachment site
Description:
Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity,
these various enzymes can be grouped [1] into subfamilies. One of these,
called class-II, currently consists of the following enzymes:
- Glycine C-acetyltransferase (EC 2.3.1.29), which catalyzes the addition of
acetyl-CoA to glycine to form 2-amino-3-oxobutanoate (gene kbl).
- 5-aminolevulinic acid synthase (EC 2.3.1.37) (delta-ALA synthase), which
catalyzes the first step in heme biosynthesis via the Shemin (or C4)
pathway, i.e. the addition of succinyl-CoA to glycine to form 5-
aminolevulinate.
- 8-amino-7-oxononanoate synthase (EC 2.3.1.47) (7-KAP synthase), a bacterial
enzyme (gene bioF) which catalyzes an intermediate step in the biosynthesis
of biotin: the addition of 6-carboxy-hexanoyl-CoA to alanine to form 8-
amino-7-oxononanoate.
- Histidinol-phosphate aminotransferase (EC 2.6.1.9), which catalyzes the
eighth step in histidine biosynthetic pathway: the transfer of an amino
group from 3-(imidazol-4-yl)-2-oxopropyl phosphate to glutamic acid to form
histidinol phosphate and 2-oxoglutarate.
- Serine C-palmitoyltransferase (EC 2.3.1.50) from yeast (genes LCB1 and
LCB2), which catalyzes the condensation of palmitoyl-CoA and serine to form
3-ketosphinganine.
The sequence around the pyridoxal-phosphate attachment site of this class of
enzyme is sufficiently conserved to allow the creation of a specific pattern.
Last update:
December 2004 / Pattern and text revised.
Technical section:
PROSITE method (with tools and information) covered by this documentation:
| AA_TRANSFER_CLASS_2, PS00599; Aminotransferases class-II pyridoxal-phosphate attachment site (PATTERN) |
| Consensus pattern: |
T-[LIVMFYW]-[STAG]-K-[SAG]-[LIVMFYWR]-[SAG]-{ENKR}-{TNDR}-[SAG]
K is the pyridoxal-P attachment site |
| Sequences known to belong to this class detected by the pattern: |
ALL, except for yeast LCB1 |
| Other sequence(s) detected in Swiss-Prot: |
41 |
|
|
|
| Matching PDB structures:
1BS0 1DJ9 1DJE 1FC4 ... [ALL] |
Reference:
| 1 |
Authors | Bairoch A. |
| Source | Unpublished observations (1991). |
Copyright:
PROSITE is copyright. It is produced by the Swiss Institute of
Bioinformatics (SIB). There are no restrictions on its use by non-profit
institutions as long as its content is in no way modified. Usage by and
for commercial entities requires a license agreement. For information
about the licensing scheme send an email to license@isb-sib.ch or
see: http://www.expasy.org/prosite/prosite_license.htm.
Miscellaneous:
View entry in original PROSITE document format
View entry in raw text format (no links)