PROSITE documentation PDOC00543

GMC oxidoreductases signatures

Description:

The following FAD flavoproteins oxidoreductases have been found [1,2] to be evolutionary related. These enzymes, which are called 'GMC oxidoreductases', are listed below.

  • Glucose oxidase (EC 1.1.3.4) (GOX) from Aspergillus niger. Reaction catalyzed: glucose + oxygen -> delta-gluconolactone + hydrogen peroxide.
  • Methanol oxidase (EC 1.1.3.13) (MOX) from fungi. Reaction catalyzed: methanol + oxygen -> acetaldehyde + hydrogen peroxide.
  • Choline dehydrogenase (EC 1.1.99.1) (CHD) from bacteria. Reaction catalyzed: choline + acceptor -> βine acetaldehyde + reduced acceptor.
  • Glucose dehydrogenase (GLD) (EC 1.1.99.10) from Drosophila. Reaction catalyzed: glucose + acceptor -> delta-gluconolactone + reduced acceptor.
  • L-sorbose 1-dehydrogenase (EC 1.1.99.32) (SDH) from Gluconobacter oxydans. Reaction catylzed: L-sorbose + acceptor = 1-dehydro-L-sorbose + reduced acceptor.
  • Cholesterol oxidase (CHOD) (EC 1.1.3.6) from Brevibacterium sterolicum and Streptomyces strain SA-COO. Reaction catalyzed: cholesterol + oxygen -> cholest-4-en-3-one + hydrogen peroxide.
  • AlkJ [3], an alcohol dehydrogenase from Pseudomonas oleovorans, which converts aliphatic medium-chain-length alcohols into aldehydes.
  • Cellobiose dehydrogenase (CDH) (EC 1.1.98.18) from Phanerochaete chrysosporium.

This family also includes a lyase:

  • (R)-mandelonitrile lyase (EC 4.1.2.10) (hydroxynitrile lyase) from plants [4], an enzyme involved in cyanogenis, the release of hydrogen cyanide from injured tissues.

These enzymes are proteins of size ranging from 556 (CHD) to 664 (MOX) amino acid residues which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP-binding domain. The function of the other conserved domains is not yet known; we have selected two of these domains as signature patterns. The first one is located in the N-terminal section of these enzymes, about 50 residues after the ADP-binding domain, while the second one is located in the central section.

Last update:

May 2008 / Text revised.

Technical section:

PROSITE methods (with tools and information) covered by this documentation:

GMC_OXRED_1, PS00623GMC oxidoreductases signature 1  (PATTERN)
Consensus pattern: [GA]-[RKNC]-x-[LIVW]-G(2)-[GST](2)-x-[LIVM]-[NH]-x(3)-[FYWA]-x(2)-[PAG]-x(5)-[DNESHQA]
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE.
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00623
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00623
Scan Swiss-Prot/TrEMBL entries against PS00623
view ligand binding statistics
Matching PDB structures: 1B4V 1B8S 1CBO 1CC2 ... [ALL]
GMC_OXRED_2, PS00624GMC oxidoreductases signature 2  (PATTERN)
Consensus pattern: [GS]-[PSTA]-x(2)-[ST]-[PS]-x-[LIVM](2)-x(2)-S-G-[LIVM]-G
Sequences known to belong to this class detected by the pattern: ALL, except for cholesterol oxidases
Other sequence(s) detected in Swiss-Prot: NONE.
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00624
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00624
Scan Swiss-Prot/TrEMBL entries against PS00624
view ligand binding statistics
Matching PDB structures: 1CF3 1GAL 1GPE 1KDG ... [ALL]

References:

1 AuthorsCavener D.R.
TitleGMC oxidoreductases. A newly defined family of homologous proteins with diverse catalytic activities.
SourceJ. Mol. Biol. 223:811-814(1992).
PubMed ID1542121
2 AuthorsHenikoff S., Henikoff J.G.
TitleProtein family classification based on searching a database of blocks.
SourceGenomics 19:97-107(1994).
PubMed ID8188249
3 Authorsvan Beilen J.B., Eggink G., Enequist H., Bos R., Witholt B.
SourceMol. Microbiol. 6:3121-3136(1992).
4 AuthorsCheng I.P., Poulton J.E.
SourcePlant Cell Physiol. 34:1139-1143(1993).

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