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| PROSITE documentation PDOC00543 |
GMC oxidoreductases signatures
Description:
The following FAD flavoproteins oxidoreductases have been found [1,2] to be
evolutionary related. These enzymes, which are called 'GMC oxidoreductases',
are listed below.
- Glucose oxidase (EC 1.1.3.4) (GOX) from Aspergillus niger.
Reaction catalyzed: glucose + oxygen -> delta-gluconolactone + hydrogen
peroxide.
- Methanol oxidase (EC 1.1.3.13) (MOX) from fungi.
Reaction catalyzed: methanol + oxygen -> acetaldehyde + hydrogen peroxide.
- Choline dehydrogenase (EC 1.1.99.1) (CHD) from bacteria.
Reaction catalyzed: choline + acceptor -> βine acetaldehyde + reduced
acceptor.
- Glucose dehydrogenase (GLD) (EC 1.1.99.10) from Drosophila.
Reaction catalyzed: glucose + acceptor -> delta-gluconolactone + reduced
acceptor.
- L-sorbose 1-dehydrogenase (EC 1.1.99.32) (SDH) from Gluconobacter oxydans.
Reaction catylzed: L-sorbose + acceptor = 1-dehydro-L-sorbose + reduced
acceptor.
- Cholesterol oxidase (CHOD) (EC 1.1.3.6) from Brevibacterium sterolicum and
Streptomyces strain SA-COO.
Reaction catalyzed: cholesterol + oxygen -> cholest-4-en-3-one + hydrogen
peroxide.
- AlkJ [3], an alcohol dehydrogenase from Pseudomonas oleovorans, which
converts aliphatic medium-chain-length alcohols into aldehydes.
- Cellobiose dehydrogenase (CDH) (EC 1.1.98.18) from Phanerochaete
chrysosporium.
This family also includes a lyase:
- (R)-mandelonitrile lyase (EC 4.1.2.10) (hydroxynitrile lyase) from plants
[4], an enzyme involved in cyanogenis, the release of hydrogen cyanide from
injured tissues.
These enzymes are proteins of size ranging from 556 (CHD) to 664 (MOX) amino
acid residues which share a number of regions of sequence similarities. One of
these regions, located in the N-terminal section, corresponds to the FAD ADP-binding domain. The function of the other conserved domains is not yet known;
we have selected two of these domains as signature patterns. The first one is
located in the N-terminal section of these enzymes, about 50 residues after
the ADP-binding domain, while the second one is located in the central
section.
Last update:
May 2008 / Text revised.
Technical section:
PROSITE methods (with tools and information) covered by this documentation:
| GMC_OXRED_1, PS00623; GMC oxidoreductases signature 1 (PATTERN) |
| Consensus pattern: |
[GA]-[RKNC]-x-[LIVW]-G(2)-[GST](2)-x-[LIVM]-[NH]-x(3)-[FYWA]-x(2)-[PAG]-x(5)-[DNESHQA]
|
| Sequences known to belong to this class detected by the pattern: |
ALL |
| Other sequence(s) detected in Swiss-Prot: |
NONE. |
|
|
|
| Matching PDB structures:
1B4V 1B8S 1CBO 1CC2 ... [ALL] |
| GMC_OXRED_2, PS00624; GMC oxidoreductases signature 2 (PATTERN) |
| Consensus pattern: |
[GS]-[PSTA]-x(2)-[ST]-[PS]-x-[LIVM](2)-x(2)-S-G-[LIVM]-G
|
| Sequences known to belong to this class detected by the pattern: |
ALL, except for cholesterol oxidases |
| Other sequence(s) detected in Swiss-Prot: |
NONE. |
|
|
|
| Matching PDB structures:
1CF3 1GAL 1GPE 1KDG ... [ALL] |
References:
| 1 |
Authors | Cavener D.R. |
| Title | GMC oxidoreductases. A newly defined family of homologous proteins with diverse catalytic activities. |
| Source | J. Mol. Biol. 223:811-814(1992). |
| PubMed ID | 1542121 |
| 2 |
Authors | Henikoff S., Henikoff J.G. |
| Title | Protein family classification based on searching a database of blocks. |
| Source | Genomics 19:97-107(1994). |
| PubMed ID | 8188249 |
| 3 |
Authors | van Beilen J.B., Eggink G., Enequist H., Bos R., Witholt B. |
| Source | Mol. Microbiol. 6:3121-3136(1992). |
| 4 |
Authors | Cheng I.P., Poulton J.E. |
| Source | Plant Cell Physiol. 34:1139-1143(1993). |
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