PROSITE documentation PDOC00571

Serine proteases, V8 family, active sites

Description:

A number of prokaryotic proteases have been shown [1,2] to be evolutionary related; their catalytic activity is provided by a charge relay system similar to that of the trypsin family of serine proteases but which probably evolved by independent convergent evolution. The sequence around the residues involved in the catalytic triad (aspartic acid, serine and histidine) are completely different from that of the analogous residues in the trypsin serine proteases and can be used as signatures specific to that category of proteases. The proteases which are known to belong to this family are listed below.

  • Staphylococcus aureus V8 proteinase, which preferentially cleaves peptide bonds on the carboxyl-terminal side of aspartate and glutamate and which is widely used in protein sequencing studies.
  • Bacillus licheniformis glutamate specific endopeptidase (GSE) [3], which like V8 cleaves on the carboxyl-terminal side of acidic residues, but with a strong preference for glutamate.
  • Bacillus subtilis extracellular "metalloprotease" (gene mpr) [4].
  • Staphylococcus aureus exfoliative (or epidermolytic) toxins A (gene eta) and B (gene etb). These toxins cause impetigous diseases commonly referred to as staphylococcal scalded skin syndrome (SSSS) and have been shown [1] to possess proteolytic activity.

Note:

These proteins belong to family S2B in the classification of peptidases [5,E1].

Last update:

November 1995 / Patterns and text revised.

Technical section:

PROSITE methods (with tools and information) covered by this documentation:

V8_HIS, PS00672Serine proteases, V8 family, histidine active site  (PATTERN)
Consensus pattern: [ST]-G-[LIVMFYW](3)-[GN]-x(2)-T-[LIVM]-x-T-x(2)-H
H is the active site residue
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE.
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00672
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00672
Scan Swiss-Prot/TrEMBL entries against PS00672
view ligand binding statistics
Matching PDB structures: 1AGJ 1DT2 1DUA 1DUE ... [ALL]
V8_SER, PS00673Serine proteases, V8 family, serine active site  (PATTERN)
Consensus pattern: T-x(2)-[GC]-[NQ]-S-G-S-x-[LIVM]-[FY]
The first S is the active site residue
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE.
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00673
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00673
Scan Swiss-Prot/TrEMBL entries against PS00673
view ligand binding statistics
Matching PDB structures: 1AGJ 1DT2 1DUA 1EXF ... [ALL]

References:

1 AuthorsDancer S.J., Garratt R., Saldanha J., Jhoti H., Evans R.
TitleThe epidermolytic toxins are serine proteases.
SourceFEBS Lett. 268:129-132(1990).
PubMed ID2384148
2 AuthorsBailey C.J., Smith T.P.
TitleThe reactive serine residue of epidermolytic toxin A.
SourceBiochem. J. 269:535-537(1990).
PubMed ID9065774
3 AuthorsSvendsen I., Breddam K.
TitleIsolation and amino acid sequence of a glutamic acid specific endopeptidase from Bacillus licheniformis.
SourceEur. J. Biochem. 204:165-171(1992).
PubMed ID1346764
4 AuthorsSloma A., Rudolph C.F., Rufo G.A. Jr., Sullivan B.J., Theriault K.A., Ally D., Pero J.
TitleGene encoding a novel extracellular metalloprotease in Bacillus subtilis.
SourceJ. Bacteriol. 172:1024-1029(1990).
PubMed ID2105291
5 AuthorsRawlings N.D., Barrett A.J.
TitleFamilies of serine peptidases.
SourceMethods Enzymol. 244:19-61(1994).
PubMed ID7845208
E1
Sourcehttp://www.expasy.org/cgi-bin/lists?peptidas.txt

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