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PROSITE documentation PDOC00626

Ribosomal protein L34 signature

Description:

Ribosomal protein L34 is one of the proteins from the large subunit of the prokaryotic ribosome. It is a small basic protein of 44 to 51 amino-acid residues [1]. L34 belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups:

  • Eubacterial L34.
  • Red algal chloroplast L34.
  • Cyanelle L34.

As a signature pattern, we selected a conserved region that corresponds to the N-terminal half of L34.

Last update:

April 2006 / Pattern revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_L34, PS00784; Ribosomal protein L34 signature  (PATTERN)
Consensus pattern: [KFQ]-[RGMP]-[TN]-[FYWL]-[EQSG]-x(5)-[KRHS]-x(4,5)-G-F-x(2)-R
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00784
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00784
• Scan Swiss-Prot/TrEMBL entries against PS00784
• view ligand binding statistics
Matching PDB structures: 1NKW 1NWX 1NWY 1PNU ... [ALL]

Reference:

1 AuthorsOld I.G., Margarita D., Saint Girons I.
TitleNucleotide sequence of the Borrelia burgdorferi rpmH gene encoding ribosomal protein L34.
SourceNucleic Acids Res. 20:6097-6097(1992).
PubMed ID1461740

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