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PROSITE documentation PDOC00650

Ribosomal protein L36 signature

Description:

Ribosomal protein L36 is the smallest protein from the large subunit of the prokaryotic ribosome. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [1], groups:

  • Eubacterial L36.
  • Algal and plant chloroplast L36.
  • Cyanelle L36.

L36 is a small basic and cysteine-rich protein of 37 amino-acid residues. As a signature pattern, we selected a conserved region that corresponds to positions 11 to 36 in L36 and includes three conserved cysteine residues.

Last update:

April 2006 / Pattern revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_L36, PS00828; Ribosomal protein L36 signature  (PATTERN)
Consensus pattern: [CHDS]-x(2)-[CND]-x(2)-[LIVM]-x-R-x(3)-[LIVMNR]-x-[LIVM]-x-[CN]-x(3,4)-[KRSN]-[HLFR]-x-[QCAV]-x-Q
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00828
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00828
• Scan Swiss-Prot/TrEMBL entries against PS00828
• view ligand binding statistics
Matching PDB structures: 1DFE 1DGZ 1NKW 1NWX ... [ALL]

Reference:

1 AuthorsOtaka E., Hashimoto T., Mizuta K.
SourceProtein Seq. Data Anal. 5:285-300(1993).

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