PROSITE documentation PDOC00654

Alanine dehydrogenase and pyridine nucleotide transhydrogenase signatures

Description:

The following dehydrogenases have been shown [1] to share regions of similarity:

  • Alanine dehydrogenase (EC 1.4.1.1), an enzyme which catalyzes the NAD- dependent reversible reductive amination of pyruvate into alanine.
  • Pyridine nucleotide transhydrogenase (EC 1.6.1.1), which is the enzyme that catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits: an α chain (gene pntA) and a β chain (gene pntB) while in eukaryotes it is a single chain protein.

The sequence of alanine dehydrogenase from several bacterial species are related with those of the α subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. We have developed signature patterns for both regions.

Last update:

April 2006 / Patterns revised.

Technical section:

PROSITE methods (with tools and information) covered by this documentation:

ALADH_PNT_1, PS00836Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1  (PATTERN)
Consensus pattern: [GA]-[LIVM]-[PKV]-x(0,1)-E-x(3)-[NG]-E-x(1,3)-R-[VT]-[AG]-x-[ST]-P-x-[GSTVN]-[VA]-x(2)-[LI]-x-[KRHNGSED]-x-G
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE.
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00836
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00836
Scan Swiss-Prot/TrEMBL entries against PS00836
view ligand binding statistics
Matching PDB structures: 1F8G 1HZZ 1L7D 1L7E ... [ALL]
ALADH_PNT_2, PS00837Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2  (PATTERN)
Consensus pattern: [LIVM]-[LIVMF]-G-[GAV]-G-x-[AV]-[GA]-x(2)-[SA]-x(3)-[GA]-x-[SGR]-[LIVM]-[GN]-A-x-V-x(3)-[DE]
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE.
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00837
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00837
Scan Swiss-Prot/TrEMBL entries against PS00837
view ligand binding statistics
Matching PDB structures: 1F8G 1HZZ 1L7D 1L7E ... [ALL]

Reference:

1 AuthorsDelforge D., Depiereux E., De Bolle X., Feytmans E., Remacle J.
TitleSimilarities between alanine dehydrogenase and the N-terminal part of pyridine nucleotide transhydrogenase and their possible implication in the virulence mechanism of Mycobacterium tuberculosis.
SourceBiochem. Biophys. Res. Commun. 190:1073-1079(1993).
PubMed ID8439307

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