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PROSITE documentation PDOC00721

Ribosomal protein L35 signature

Description:

Ribosomal protein L35 is one of the proteins from the large subunit of the ribosome. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [1], groups:

  • Eubacterial L35.
  • Plant chloroplast L35 (nuclear-encoded).
  • Red algal chloroplast L35.
  • Cyanelle L35.

L35 is a basic protein of 60 to 70 amino-acid residues. As a signature pattern we selected a conserved region in the N-terminal section.

Last update:

December 2004 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_L35, PS00936; Ribosomal protein L35 signature  (PATTERN)
Consensus pattern: K-[STNV]-{F}-x-[GSAM]-[SAILV]-x-[KRA]-R-[IVFY]-x(14,16)-[GSANQKR]-H
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00936
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00936
• Scan Swiss-Prot/TrEMBL entries against PS00936
• view ligand binding statistics
Matching PDB structures: 1NKW 1NWX 1NWY 1PNU ... [ALL]

Reference:

1 AuthorsOtaka E., Hashimoto T., Mizuta K.
SourceProtein Seq. Data Anal. 5:285-300(1993).

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