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| PROSITE documentation PDOC00724 |
Ribosomal protein L1e signature
Description:
A number of eukaryotic and archaebacterial ribosomal proteins can be grouped
on the basis of sequence similarities. One of these families consists [1,2,3,4] of:
- Vertebrate L1 (L4).
- Drosophila L1.
- Plant L1.
- Yeast L2 (Rp2).
- Fission yeast L2.
- Halobacterium marismortui HmaL4 (HL6).
- Methanococcus jannaschii MJ0177.
These proteins have 246 (archaebacteria) to 427 (human) amino acids. As a
signature pattern, we selected a conserved region in the N-terminal part of
these proteins.
Last update:
December 2004 / Pattern and text revised.
Technical section:
PROSITE method (with tools and information) covered by this documentation:
| RIBOSOMAL_L1E, PS00939; Ribosomal protein L1e signature (PATTERN) |
| Consensus pattern: |
[NP]-x(3)-[KRM]-x(2)-A-[LIVTK]-x-[SA]-[AC]-[LIV]-x-[ALCM]-[STL]-[SGAKTI]-x(7)-[RK]-[GS]-H
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| Sequences known to belong to this class detected by the pattern: |
ALL |
| Other sequence(s) detected in Swiss-Prot: |
NONE |
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| Matching PDB structures:
1FFK 1JJ2 1K5Y 1K73 ... [ALL] |
References:
| 1 |
Authors | Rafti F., Gargiulo G., Manzi A., Malva C., Graziani F. |
| Title | Sequence of the ribosomal protein cDNA of D. melanogaster homologous to the L1 ribosomal protein gene of X. laevis. |
| Source | Nucleic Acids Res. 17:456-456(1989). |
| PubMed ID | 2492096 |
| 2 |
Authors | Presutti C., Villa T., Bozzoni I. |
| Title | The primary sequence of the Schizosaccharomyces pombe protein homologous to S.cerevisiae ribosomal protein L2. |
| Source | Nucleic Acids Res. 21:3900-3900(1993). |
| PubMed ID | 8367312 |
| 3 |
Authors | Bagni C., Mariottini P., Annesi F., Amaldi F. |
| Title | Human ribosomal protein L4: cloning and sequencing of the cDNA and primary structure of the protein. |
| Source | Biochim. Biophys. Acta 1216:475-478(1993). |
| PubMed ID | 8268230 |
| 4 |
Authors | Arndt E., Kroemer W., Hatakeyama T. |
| Title | Organization and nucleotide sequence of a gene cluster coding for eight ribosomal proteins in the archaebacterium Halobacterium marismortui. |
| Source | J. Biol. Chem. 265:3034-3039(1990). |
| PubMed ID | 2406244 |
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