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PROSITE documentation PDOC00805

Ribosomal protein S6 signature

Description:

Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups:

  • Eubacterial S6.
  • Red algal chloroplast S6.
  • Cyanelle S6.

S6 is a protein of 95 to 208 amino-acid residues. The signature pattern for this protein is based on a conserved region located in the N-terminal section of these proteins.

Last update:

November 1997 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_S6, PS01048; Ribosomal protein S6 signature  (PATTERN)
Consensus pattern: G-x-[KRC]-[DENQRH]-L-[SA]-Y-x-I-[KRNSA]
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS01048
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS01048
• Scan Swiss-Prot/TrEMBL entries against PS01048
• view ligand binding statistics
Matching PDB structures: 1CQM 1CQN 1EG0 1FJG ... [ALL]

Reference:

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