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PROSITE documentation PDOC00824

Ribosomal protein L24e signature

Description:

A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists [1] of:

  • Mammalian ribosomal protein L24.
  • Yeast ribosomal protein L30A/B (Rp29) (YL21).
  • Kluyveromyces lactis ribosomal protein L30.
  • Arabidopsis thaliana ribosomal protein L24 homolog.
  • Haloarcula marismortui ribosomal protein HL21/HL22.
  • Methanococcus jannaschii MJ1201.

These proteins have 60 to 160 amino-acid residues. As a signature pattern, we selected the most conserved region which is located in the N-terminal region of these proteins.

Last update:

December 2004 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_L24E, PS01073; Ribosomal protein L24e signature  (PATTERN)
Consensus pattern: [FY]-x-[GSHE]-x(2)-[IVLF]-x-P-[GA]-x-G-x(2)-[FYV]-x-[KRHE]-x-D
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS01073
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS01073
• Scan Swiss-Prot/TrEMBL entries against PS01073
• view ligand binding statistics
Matching PDB structures: 1FFK 1JJ2 1K5Y 1K73 ... [ALL]

Reference:

1 AuthorsChan Y.-L., Olvera J., Wool I.G.
TitleThe primary structure of rat ribosomal protein L24.
SourceBiochem. Biophys. Res. Commun. 202:1176-1180(1994).
PubMed ID8048931

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