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PROSITE documentation PDOC00849

Ribosomal protein L35Ae signature

Description:

A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of:

  • Vertebrate L35A.
  • Caenorhabditis elegans L35A (F10E7.7).
  • Yeast L37A/L37B (Rp47).
  • Pyrococcus woesei L35A homolog [1].

These proteins have 87 to 110 amino-acid residues. As a signature pattern, we selected a highly conserved stretch of 22 residues in the C-terminal part of these proteins.

Last update:

December 2004 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_L35AE, PS01105; Ribosomal protein L35Ae signature  (PATTERN)
Consensus pattern: G-[KT]-[LIVM]-x-[RD]-x-H-G-x(2)-G-x-V-x-[AVS]-x-F-x(3)-[LI]-P
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS01105
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS01105
• Scan Swiss-Prot/TrEMBL entries against PS01105
• view ligand binding statistics
Matching PDB structures: 1SQR 3IZS [ALL]

Reference:

1 AuthorsOuzounis C., Kyrpides N., Sander C.
SourceNucleic Acids Res. 23:565-570(1995).

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