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PROSITE documentation PDOC00851

Ribosomal protein L27e signature

Description:

A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities [1,2]. One of these families consists of:

  • Vertebrate L27.
  • Plant and algal L27.
  • Fungi L27.

These proteins have 134 to 138 amino-acid residues. As a signature pattern, we selected a highly conserved stretch of 12 residues in their C-terminal extremity.

Last update:

December 2001 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_L27E, PS01107; Ribosomal protein L27e signature  (PATTERN)
Consensus pattern: G-K-[NS]-x-W-F-F-x(2)-L-[RH]-F>
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS01107
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS01107
• Scan Swiss-Prot/TrEMBL entries against PS01107
• view ligand binding statistics

References:

1 AuthorsGallagher R.A., McClean P.M., Malik A.N.
TitleCloning and nucleotide sequence of a full length cDNA encoding ribosomal protein L27 from human fetal kidney.
SourceBiochim. Biophys. Acta 1217:329-332(1994).
PubMed ID8148381
2 AuthorsTaylor M.A., Davies H.V.
TitleNucleotide sequence of a cDNA clone for a 60S ribosomal protein L27 gene from potato (Solanum tuberosum L.).
SourcePlant Physiol. 105:1025-1026(1994).
PubMed ID8058833
DOI105/3/1025

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