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PROSITE documentation PDOC00852

Ribosomal protein L24 signature

Description:

Ribosomal protein L24 is one of the proteins from the large ribosomal subunit. L24 belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups:

  • Eubacterial L24.
  • Plant chloroplast L24 (nuclear-encoded).
  • Red algal L24.
  • Vertebrate L26.
  • Yeast L26 (YL33).
  • Archaebacterial HmaL24 (HL15).
  • A probable ribosomal protein from Sulfolobus acidocaldarius [1].

In their mature form, these proteins have 103 to 150 amino-acid residues. As a signature pattern, we selected a conserved stretch of 20 residues in their N-terminal section.

Last update:

December 2004 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_L24, PS01108; Ribosomal protein L24 signature  (PATTERN)
Consensus pattern: [GDEN]-D-x-[IV]-x-[IV]-[LIVMA]-x-G-x(2)-[KRA]-[GNQK]-x(2,3)-[GA]-x-[IV]
Sequences known to belong to this class detected by the pattern: ALL, except for the Sulfolobus sequence
Other sequence(s) detected in Swiss-Prot: 1
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS01108
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS01108
• Scan Swiss-Prot/TrEMBL entries against PS01108
• view ligand binding statistics
Matching PDB structures: 1FFK 1GIY 1GS2 1JJ2 ... [ALL]

Reference:

1 AuthorsOuzounis C., Kyrpides N., Sander C.
SourceNucleic Acids Res. 23:565-570(1995).

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