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PROSITE documentation PDOC00853

Ribosomal protein L10 signature

Description:

Ribosomal protein L10 is one of the proteins from the large ribosomal subunit. L10 is a protein of 162 to 185 amino-acid residues which has only been found so far in eubacteria. As a signature pattern, we selected a conserved region located in the N-terminal section of these proteins.

Last update:

April 2006 / Pattern revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_L10, PS01109; Ribosomal protein L10 signature  (PATTERN)
Consensus pattern: [KNQ]-x(2)-{K}-x(3)-{A}-{L}-x(9)-[LIVMFY]-x(2)-[DENHR]-x(2)-[GS]-[LIVMF]-[STDNQC]-[VTA]-x-[DENQKHPSA]-[LIVMSAD]-x(2)-[LIMF]-[KR]
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: 4
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS01109
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS01109
• Scan Swiss-Prot/TrEMBL entries against PS01109
• view ligand binding statistics
Matching PDB structures: 1ZAV 1ZAW 1ZAX [ALL]

Reference:

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