PROSITE documentation PDOC00864

Caspase family signatures and profiles

Description:

Interleukin-1 β converting enzyme (EC 3.4.22.36) (ICE) [1,2] is responsible for the cleavage of the IL-1 β precursor at an Asp-Ala bond to generate the mature biologically active cytokine. ICE a thiol protease composed of two subunits of 10 (p10) and 20 Kd (p20), both derived by the autocleavage of a 45 Kd precursor (p45). Two residues are implicated in the catalytic mechanism: a cysteine and an histidine. They are located in the P20 subunit after cleavage of the precursor. ICE belongs to a family of peptidases [3] which is implicated in programmed cell death (apoptosis) and which has been termed 'caspase' for cysteine aspase. ICE is known as Caspase-1 and the other members of this family [4] are:

  • Caspase-2 (ICH-1, NEDD-2).
  • Caspase-3 (also known as apopain, CPP32, Yama), a protease which, at the onset of apoptosis, proteolytically cleaves poly(ADP-ribose) polymerase (see <PDOC00360>) at an Asp-Gly bond.
  • Caspase-4 (ICH-2, TX, ICErel-II).
  • Caspase-5 (ICH-3, TY, ICErel-III).
  • Caspase-6 (MCH-2).
  • Caspase-7 (MCH-3, ICE-LAP3, CMH-1, SCA-2, LICE2).
  • Caspase-8 (MCH-5, MACH, FLICE).
  • Caspase-9 (MCH-6, ICE-LAP6).
  • Caspase-10 (MCH-4, FLICE2).
  • Caspase-11.
  • Caspase-12.
  • Caspase-13 (ERICE).
  • Caspase-14.
  • Caenorhabditis elegans ced-3 involved in the initiation of apoptosis.
  • Drosophila Ice.

We have developed signature patterns for both active site residues. We also developed two profiles, one specific for the caspase P10 subunit and one for the caspase P20 subunit.

Note:

These proteins belong to family C14 in the classification of peptidases [5,E1].

Last update:

December 2004 / Patterns and text revised.

Technical section:

PROSITE methods (with tools and information) covered by this documentation:

CASPASE_P10, PS50207Caspase family p10 domain profile  (MATRIX)
Sequences known to belong to this class detected by the profile: ALL
Other sequence(s) detected in Swiss-Prot: NONE.
Domain architecture view of Swiss-Prot proteins matching PS50207
PS50207
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS50207
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS50207
Scan Swiss-Prot/TrEMBL entries against PS50207
view ligand binding statistics
Matching PDB structures: 1BMQ 1CP3 1F1J 1F9E ... [ALL]
CASPASE_P20, PS50208Caspase family p20 domain profile  (MATRIX)
Domain architecture view of Swiss-Prot proteins matching PS50208
PS50208
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS50208
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS50208
Scan Swiss-Prot/TrEMBL entries against PS50208
view ligand binding statistics
Matching PDB structures: 1BMQ 1CP3 1F1J 1F9E ... [ALL]
CASPASE_CYS, PS01122Caspase family cysteine active site  (PATTERN)
Consensus pattern: K-P-K-[LIVMF]-[LIVMFY]-[LIVMF](2)-[QP]-[AF]-C-[RQG]-[GE]
C is the active site residue
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE.
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS01122
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS01122
Scan Swiss-Prot/TrEMBL entries against PS01122
view ligand binding statistics
Matching PDB structures: 1BMQ 1CP3 1F1J 1F9E ... [ALL]
CASPASE_HIS, PS01121Caspase family histidine active site  (PATTERN)
Consensus pattern: H-x(2,4)-[SC]-x(2)-{A}-x-[LIVMF](2)-[ST]-H-G
The second H is an active site residue
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: 5.
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS01121
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS01121
Scan Swiss-Prot/TrEMBL entries against PS01121
view ligand binding statistics
Matching PDB structures: 1BMQ 1CP3 1F1J 1F9E ... [ALL]

References:

1 AuthorsThornberry N.A., Molineaux S.M.
TitleInterleukin-1 beta converting enzyme: a novel cysteine protease required for IL-1 beta production and implicated in programmed cell death.
SourceProtein Sci. 4:3-12(1995).
PubMed ID7773174
2 AuthorsKumar S.
TitleICE-like proteases in apoptosis.
SourceTrends Biochem. Sci. 20:198-202(1995).
PubMed ID7610484
3 AuthorsNicholson D.W., Thornberry N.A.
TitleCaspases: killer proteases.
SourceTrends Biochem. Sci. 22:299-306(1997).
PubMed ID9270303
4 AuthorsAlnemri E.S., Livingston D.J., Nicholson D.W., Salvesen G., Thornberry N.A., Wong W.W., Yuan J.
TitleHuman ICE/CED-3 protease nomenclature.
SourceCell 87:171-171(1996).
PubMed ID8861900
5 AuthorsRawlings N.D., Barrett A.J.
TitleEvolutionary families of peptidases.
SourceBiochem. J. 290:205-218(1993).
PubMed ID8439290
E1
Sourcehttp://www.expasy.org/cgi-bin/lists?peptidas.txt

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