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PROSITE documentation PDOC00880

Ribosomal protein L31 signature

Description:

Ribosomal protein L31 is one of the proteins from the large ribosomal subunit. L31 is a protein of 66 to 97 amino-acid residues which has only been found in eubacteria (some of which have two different copies) and in some algal chloroplasts.

As a signature pattern, we selected a conserved region located in the central section of these proteins.

Last update:

December 2001 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_L31, PS01143; Ribosomal protein L31 signature  (PATTERN)
Consensus pattern: [DES]-[IVT]-x(4)-H-[PT]-[FAVY]-[FYW]-[TISN]-x(9,13)-[GN]-[KRHNQ]
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS01143
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS01143
• Scan Swiss-Prot/TrEMBL entries against PS01143
• view ligand binding statistics
Matching PDB structures: 1NKW 1NWX 1NWY 1PNU ... [ALL]

Reference:

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