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PROSITE documentation PDOC00900

Ribosomal protein L6e signature

Description:

A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of:

  • Mammalian ribosomal protein L6 (L6 was previously known as TAX-responsive enhancer element binding protein 107).
  • Caenorhabditis elegans ribosomal protein L6 (R151.3).
  • Yeast ribosomal protein YL16A/YL16B.
  • Mesembryanthemum crystallinum ribosomal protein YL16-like.

These proteins have 175 (yeast) to 287 (mammalian) amino acids. As a signature pattern, we selected a highly conserved region in the central part of these proteins.

Last update:

December 2004 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_L6E, PS01170; Ribosomal protein L6e signature  (PATTERN)
Consensus pattern: N-x(2)-P-[LI]-R-R-x(4)-[FY]-V-I-A-T-S-x(1,2)-K
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS01170
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS01170
• Scan Swiss-Prot/TrEMBL entries against PS01170
• view ligand binding statistics
Matching PDB structures: 3IZS 3O58 3O5H [ALL]

Reference:

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