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PROSITE documentation PDOC00916

Ribosomal protein L36e signature

Description:

A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of:

  • Mammalian L36 [1].
  • Drosophila L36 (M(1)1B).
  • Caenorhabditis elegans L36.
  • Plants L36.
  • Candida albicans L39.
  • Yeast YL39.

These proteins have 99 to 115 amino acids. As a signature pattern, we selected a conserved region in the central part of these proteins.

Last update:

December 2001 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_L36E, PS01190; Ribosomal protein L36e signature  (PATTERN)
Consensus pattern: P-Y-E-[KR]-R-x-[LIVMT]-[DE]-[LIVM](2)-[KR]
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS01190
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS01190
• Scan Swiss-Prot/TrEMBL entries against PS01190
• view ligand binding statistics
Matching PDB structures: 3IZS 4A18 4A19 4A1B ... [ALL]

Reference:

1 AuthorsChan Y.-L., Paz V., Olvera J., Wool I.G.
TitleThe primary structure of rat ribosomal protein L36.
SourceBiochem. Biophys. Res. Commun. 192:849-853(1993).
PubMed ID8484789

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