Home ScanProsite ProRule Documents Downloads Links Funding
PROSITE documentation PDOC00917

Ribosomal protein S3Ae signature

Description:

A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of:

  • Mammalian S3A (was originally known as v-fos transformation effector protein).
  • Caenorhabditis elegans S3A (F56F3.5).
  • Plant cytoplasmic S3A (CYC07) [1].
  • Yeast Rp10 (PLC1 and PLC2).
  • Fission yeast Rp10 (SpAC13G6.02c).
  • Methanococcus jannaschii MJ0980.

These proteins have from 220 to 250 amino acids. As a signature pattern, we selected a conserved stretch in their N-terminal section.

Last update:

December 2004 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_S3AE, PS01191; Ribosomal protein S3Ae signature  (PATTERN)
Consensus pattern: [LIV]-x-[GHN]-R-[IVNT]-x-E-x-[SCT]-[LV]-x-[DE]-[LVI]
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS01191
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS01191
• Scan Swiss-Prot/TrEMBL entries against PS01191
• view ligand binding statistics
Matching PDB structures: 2XZM 2XZN [ALL]

Reference:

1 AuthorsLiu J.H., Reid D.M.
SourcePlant Physiol. 109:338-338(1995).

Copyright:

PROSITE is copyright. It is produced by the Swiss Institute of Bioinformatics (SIB). There are no restrictions on its use by non-profit institutions as long as its content is in no way modified. Usage by and for commercial entities requires a license agreement. For information about the licensing scheme send an email to license@isb-sib.ch or see: http://www.expasy.org/prosite/prosite_license.htm.

Miscellaneous:

View entry in original PROSITE document format
View entry in raw text format (no links)