PROSITE documentation PDOC50189

NTR domain profile

Description:

The netrin (NTR) module is an about 130-residue domain found in the C-terminal parts of netrins, complement proteins C3, C4, and C5, secreted frizzled-related proteins, and type I procollagen C-proteinase enhancer proteins (PCOLCEs), as well as in the N-terminal parts of tissue inhibitors of metalloproteinases (TIMPs) (see <PDOC00260>). The proteins harboring the NTR domain fulfill diverse biological roles ranging from axon guidance, regulation of Wnt signalling, to the control of the activity of metalloproteinases. The NTR domain can be found associated to other domains such as CUB (see <PDOC00908>), WAP (see <PDOC00026>), Kazal (see <PDOC00254>), Kunitz (see <PDOC00252>), Ig-like (see <PDOC50835>), laminin N-terminal, laminin-type EGF (see <PDOC00961>) or frizzled (see <PDOC50038>). The NTR domain is implicated in inhibition of zinc metalloproteinases of the metzincin family [1,2].

The NTR module is a basic domain containing six conserved cysteines, which are likely to form internal disulfide bonds, and several conserved blocks of hydrophobic residues (including an YLLLG-like motif). The NTR module consists of a β-barrel with two terminal α-helices packed side by side against the face of the β-barrel (see <PDB:1BR9>) [1].

The profile we developed covers the entire NTR domain.

Last update:

November 2003 / First entry.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

NTR, PS50189NTR domain profile  (MATRIX)
Sequences known to belong to this class detected by the profile: ALL
Other sequence(s) detected in Swiss-Prot: NONE
Domain architecture view of Swiss-Prot proteins matching PS50189
PS50189
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Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS50189
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS50189
Scan Swiss-Prot/TrEMBL entries against PS50189
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Matching PDB structures: 1BQQ 1BR9 1BUV 1D2B ... [ALL]

References:

1 AuthorsBanyai L., Patthy L.
TitleThe NTR module: domains of netrins, secreted frizzled related proteins, and type I procollagen C-proteinase enhancer protein are homologous with tissue inhibitors of metalloproteases.
SourceProtein Sci. 8:1636-1642(1999).
PubMed ID10452607
2 AuthorsTrexler M., Banyai L., Patthy L.
TitleA human protein containing multiple types of protease-inhibitory modules.
SourceProc. Natl. Acad. Sci. U.S.A. 98:3705-3709(2001).
PubMed ID11274388
DOI10.1073/pnas.061028398

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