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Entry: PS00026
General information about the entry
Entry nameCHIT_BIND_I_1
Accession numberPS00026
Entry typePATTERN
DateAPR-1990 (CREATED); DEC-2004 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC00025
Name and characterization of the entry
DescriptionChitin recognition or binding domain signature.
PatternC-x(4,5)-C-C-S-x(2)-G-x-C-G-x(3,4)-[FYW]-C.
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 89 hits in 68 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 87 hits in 66 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 2 hits in 2 different sequences
  • Number of known missed hits: 2
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 6
  • Precision (true hits / (true hits + false positives)): 97.75 %
  • Recall (true hits / (true hits + false negatives)): 97.75 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 4
  • `Interesting' site in the pattern: 1,disulfide
  • `Interesting' site in the pattern: 3,disulfide
  • `Interesting' site in the pattern: 4,disulfide
  • `Interesting' site in the pattern: 9,disulfide
  • `Interesting' site in the pattern: 13,disulfide
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
AGI1_WHEAT  (P10968), AGI2_WHEAT  (P02876), AGI3_WHEAT  (P10969), 
AGI_HORVU   (P15312), AGI_ORYSI   (Q01MB6), AGI_ORYSJ   (Q0JF21), 
AGI_URTDI   (P11218), AMP_AMACA   (P27275), AMP_AMARE   (Q5I2B2), 
AMP_IPONI   (P81591), CBLE_VISAL  (P81859), CHAL_BRARA  (P81729), 
CHI12_ORYSJ (P25765), CHI1_GOSHI  (Q39799), CHI1_HORVU  (P11955), 
CHI1_ORYSJ  (Q42993), CHI1_SOLTU  (P52403), CHI1_THECC  (Q41596), 
CHI1_TOBAC  (P08252), CHI2_BRANA  (Q09023), CHI2_GOSHI  (Q39785), 
CHI2_ORYSJ  (Q7DNA1), CHI2_PEA    (P21226), CHI2_SOLTU  (P52404), 
CHI2_TOBAC  (P24091), CHI3_ORYSJ  (P24626), CHI3_SOLTU  (P52405), 
CHI3_TOBAC  (P29059), CHI4_BRANA  (Q06209), CHI4_ORYSJ  (O04138), 
CHI4_PHAVU  (P27054), CHI4_SOLTU  (P52406), CHI5_ORYSJ  (Q7Y1Z0), 
CHI5_PHAVU  (P36361), CHI6_ORYSJ  (Q6K8R2), CHI6_POPTR  (P16579), 
CHI7_ORYSI  (Q9SAY3), CHI7_ORYSJ  (Q7Y1Z1), CHI8_POPTR  (P16061), 
CHI9_ORYSJ  (Q688M5), CHIA_MAIZE  (P29022), CHIA_SECCE  (Q9FRV1), 
CHIB_ARATH  (P19171), CHIB_MAIZE  (P29023), CHIB_POPTR  (P29031), 
CHIB_VITVI  (P51613), CHIC_POPTR  (P29032), CHIC_SOLLC  (Q05538), 
CHIP_BETVU  (P42820), CHIT_DIOJA  (P80052), CHIT_PHAVU  (P06215), 
CHIT_SOLTU  (P05315), CHIX_PEA    (P36907), EAP1_EUCUL  (P83596), 
EAP2_EUCUL  (P83597), HEVE_HEVBR  (P02877), HEVL_ARATH  (P43082), 
HEVP_HEVBR  (P80359), KTXA_KLULA  (P09805), LECB_PHYAM  (Q9AVB0), 
LECC_PHYAM  (Q9AYP9), LECT_SOLTU  (Q9S8M0), LED2_PHYAM  (P83790), 
MLX56_MORAL (A7XQ02), WIN1_SOLTU  (P09761), WIN2_SOLTU  (P09762)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
AMP1A_LYMAR (P86521), AMP_TRIKH   (P85966)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
CHIB_PEA    (P21227), CHIT_ACTCH  (P86473), IAMY_COILA  (P15326), 
IPLAA_MORAL (P86799), IPLAB_MORAL (P86800), LECA_PHYAM  (P84282)
False positive hits (sequences which do not belong to the set under consideration):
CRF2_ASPFU  (Q4WI46), CRH2_YEAST  (P32623)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		1EN2; 1ENM; 1HEV; 1IQB; 1K7T; 1K7U; 1K7V; 1MMC; 1P3Z; 1P9G; 1P9Z; 1Q9B; 1T0W; 1UHA; 1ULK; 1ULM; 1ULN; 1WGC; 1WGT; 1WKX; 1ZNT; 1ZUV; 1ZWU; 2CWG; 2DKV; 2UVO; 2UWG; 2WGC; 2X3T; 2X52; 7WGA; 9WGA;

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