Entry: PS00067

General information about the entry

Entry name [info] 3HCDH
Accession [info] PS00067
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); JUN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00065

Name and characterization of the entry

Description [info] 3-hydroxyacyl-CoA dehydrogenase signature.
Pattern [info]
[DNES]-x(2)-[GA]-F-[LIVMFYA]-x-[NT]-R-x(3)-[PA]-[LIVMFY]-[LIVMFYST]-
x(5,6)-[LIVMFYCT]-[LIVMFYEAH]-x(2)-[GVE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_08 which contains 320'201 sequence entries.


Total number of hits 218 in 218 different sequences
Number of true positive hits 218 in 218 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 19
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 91.98 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
218 sequences

AIM1_ARATH  (Q9ZPI6), CRYL1_BOVIN (Q8SPX7), CRYL1_HUMAN (Q9Y2S2), 
CRYL1_MOUSE (Q99KP3), CRYL1_PONAB (Q5RDZ2), CRYL1_RABIT (P14755), 
CRYL1_RAT   (Q811X6), ECHA_HUMAN  (P40939), ECHA_MOUSE  (Q8BMS1), 
ECHA_PIG    (Q29554), ECHA_RAT    (Q64428), ECHP_DANRE  (Q6NYL3), 
ECHP_HUMAN  (Q08426), ECHP_MOUSE  (Q9DBM2), ECHP_PONAB  (Q5R5M8), 
ECHP_RAT    (P07896), FADB_ACIAD  (Q6FF68), FADB_ACIB3  (B7H1I0), 
FADB_ACIB5  (B7I3P1), FADB_ACIBC  (B2I2J9), FADB_ACIBS  (B0VLX4), 
FADB_ACIBY  (B0VE45), FADB_AERHH  (A0KEL1), FADB_AERS4  (A4STF2), 
FADB_ALISL  (B6EGU2), FADB_CITK8  (A8ACZ4), FADB_COLP3  (Q489W3), 
FADB_CROS8  (A7MQP0), FADB_ECO24  (A7ZU51), FADB_ECO27  (B7UNH4), 
FADB_ECO45  (B7MHD1), FADB_ECO55  (B7L9A7), FADB_ECO57  (Q8X8I2), 
FADB_ECO5E  (B5YY93), FADB_ECO7I  (B7NV20), FADB_ECO81  (B7N2F2), 
FADB_ECO8A  (B7M649), FADB_ECOBW  (C5A020), FADB_ECODH  (B1XAK8), 
FADB_ECOHS  (A8A6V1), FADB_ECOL5  (Q0TAL0), FADB_ECOL6  (Q8FBI2), 
FADB_ECOLC  (B1IW61), FADB_ECOLI  (P21177), FADB_ECOLU  (B7NFE7), 
FADB_ECOSE  (B6I4I6), FADB_ECOSM  (B1LM32), FADB_ECOUT  (Q1R466), 
FADB_ENT38  (A4WFX4), FADB_ENTCL  (Q9F0Y7), FADB_ESCF3  (B7LTY9), 
FADB_IDILO  (Q5QXH7), FADB_KLEP3  (B5XYH0), FADB_KLEP7  (A6TGM4), 
FADB_PECAS  (Q6DAP5), FADB_PHOLL  (Q7MZ92), FADB_PHOPR  (Q6LW06), 
FADB_PSE14  (Q48GW3), FADB_PSEA7  (A6V382), FADB_PSEA8  (B7UYR6), 
FADB_PSEAB  (Q02PH8), FADB_PSEAE  (Q9HZJ2), FADB_PSEE4  (Q1I7D4), 
FADB_PSEF5  (Q4KFC4), FADB_PSEFR  (P28793), FADB_PSEFS  (C3K613), 
FADB_PSEMY  (A4XSM8), FADB_PSEOL  (Q93Q12), FADB_PSEP1  (A5W6H0), 
FADB_PSEPF  (Q3K9D8), FADB_PSEPG  (B0KH74), FADB_PSEPK  (Q88L02), 
FADB_PSEPU  (Q9AHY3), FADB_PSEPW  (B1J5A5), FADB_PSESM  (Q87ZB2), 
FADB_PSEU2  (Q4ZRA0), FADB_PSEU5  (A4VKA3), FADB_PSYA2  (Q4FQC6), 
FADB_PSYCK  (Q1Q8J9), FADB_PSYWF  (A5WH99), FADB_SALA4  (B5EZW0), 
FADB_SALCH  (Q57HM6), FADB_SALEP  (B5QW85), FADB_SALG2  (B5RFL6), 
FADB_SALNS  (B4SZ85), FADB_SALPA  (Q5PKQ2), FADB_SALPB  (A9MYB0), 
FADB_SALPK  (B5BIZ0), FADB_SALSV  (B4TNZ1), FADB_SALTI  (Q8Z3C6), 
FADB_SALTY  (Q9L6L5), FADB_SERP5  (A8G8D1), FADB_SHEAM  (A1S1I8), 
FADB_SHEB2  (B8E3R3), FADB_SHEB5  (A3CYJ4), FADB_SHEB8  (A6WHA0), 
FADB_SHEB9  (A9KU91), FADB_SHEFN  (Q08A39), FADB_SHEHH  (B0TLB9), 
FADB_SHELP  (A3Q8U4), FADB_SHEON  (Q8EKR9), FADB_SHEPA  (A8GYG0), 
FADB_SHEPC  (A4Y1B6), FADB_SHEPW  (B8CH91), FADB_SHESA  (A0KR50), 
FADB_SHESH  (A8FP63), FADB_SHESM  (Q0HPB7), FADB_SHESR  (Q0I0T3), 
FADB_SHESW  (A1RDW6), FADB_SHEWM  (B1KCZ3), FADB_SHIB3  (B2TVJ5), 
FADB_SHIDS  (Q32A21), FADB_SHIF8  (Q0SZ36), FADB_SHIFL  (Q83PG1), 
FADB_SHISS  (Q3YVC1), FADB_VIBC3  (A5F465), FADB_VIBCB  (A7N1D2), 
FADB_VIBCH  (Q9KNI1), FADB_VIBCM  (C3LSI3), FADB_VIBF1  (Q5E8X6), 
FADB_VIBFM  (B5FEW8), FADB_VIBPA  (Q87TN9), FADB_VIBTL  (B7VGL4), 
FADB_VIBVU  (Q8DDK6), FADB_VIBVY  (Q7MQH9), FADB_YERE8  (A1JIG4), 
FADB_YERP3  (A7FDF2), FADB_YERPA  (Q1C2C4), FADB_YERPB  (B2K0Z6), 
FADB_YERPE  (Q8ZAN0), FADB_YERPG  (A9R754), FADB_YERPN  (Q1CN99), 
FADB_YERPP  (A4TR27), FADB_YERPS  (Q66FR8), FADB_YERPY  (B1JP63), 
FADJ_CITK8  (A8ADP2), FADJ_CROS8  (A7MH81), FADJ_ECO24  (A7ZPF8), 
FADJ_ECO27  (B7UFZ8), FADJ_ECO45  (B7MGV7), FADJ_ECO55  (B7LBJ5), 
FADJ_ECO57  (Q8XCP2), FADJ_ECO5E  (B5YXY4), FADJ_ECO7I  (B7NP24), 
FADJ_ECO81  (B7MY16), FADJ_ECO8A  (B7M6M2), FADJ_ECOBW  (C4ZVN2), 
FADJ_ECODH  (B1X9L4), FADJ_ECOHS  (A8A2L0), FADJ_ECOK1  (A1ADI8), 
FADJ_ECOL5  (Q0TFA6), FADJ_ECOL6  (Q8FFG4), FADJ_ECOLC  (B1IXA5), 
FADJ_ECOLI  (P77399), FADJ_ECOLU  (B7N5V2), FADJ_ECOSE  (B6I6Q4), 
FADJ_ECOSM  (B1LME7), FADJ_ECOUT  (Q1R972), FADJ_ENT38  (A4WCW6), 
FADJ_ESCF3  (B7LLD0), FADJ_IDILO  (Q5QXM1), FADJ_KLEP3  (B5XVW2), 
FADJ_KLEP7  (A6TC19), FADJ_PECAS  (Q6D2L7), FADJ_PECCP  (C6DAL7), 
FADJ_PHOLL  (Q7N288), FADJ_PHOPR  (Q6LTK3), FADJ_SALA4  (B5EZR9), 
FADJ_SALCH  (Q57LW6), FADJ_SALDC  (B5FPN1), FADJ_SALEP  (B5R3R9), 
FADJ_SALG2  (B5RCL3), FADJ_SALHS  (B4TCA8), FADJ_SALNS  (B4SZR0), 
FADJ_SALPA  (Q5PCX6), FADJ_SALPB  (A9N453), FADJ_SALPK  (B5BBA1), 
FADJ_SALSV  (B4TQC2), FADJ_SALTI  (Q8Z4Z0), FADJ_SALTY  (Q8ZNA7), 
FADJ_SERP5  (A8GH86), FADJ_SHIB3  (B2TWV4), FADJ_SHIBS  (Q31YB7), 
FADJ_SHIDS  (Q32DJ4), FADJ_SHIF8  (Q0T2E6), FADJ_SHIFL  (Q83QQ0), 
FADJ_SHISS  (Q3YZM2), FADJ_VIBC3  (A5F2P2), FADJ_VIBCB  (A7MS61), 
FADJ_VIBCH  (Q9KT58), FADJ_VIBF1  (Q5E3U1), FADJ_VIBPA  (Q87MM3), 
FADJ_VIBVU  (Q8DB47), FADJ_VIBVY  (Q7MIS5), FADJ_YERE8  (A1JK30), 
FADJ_YERP3  (A7FGK1), FADJ_YERPA  (Q1C660), FADJ_YERPE  (Q8ZD45), 
FADJ_YERPN  (Q1CHK2), FADJ_YERPP  (A4TM82), FADJ_YERPS  (Q668V1), 
HBD_BACSU   (P45856), HBD_BRADU   (Q45223), HBD_CLOAB   (P52041), 
HBD_DEIRA   (Q9RVG1), HBD_PEPDI   (P45364), HBD_THETC   (P77851), 
HCDH1_CAEEL (P34439), HCDH2_CAEEL (P41938), HCDH_HUMAN  (Q16836), 
HCDH_MOUSE  (Q61425), HCDH_PIG    (P00348), HCDH_RAT    (Q9WVK7), 
MFP2_ARATH  (Q9ZPI5), MFPA_BRANA  (O49809), MFPA_CUCSA  (Q39659), 
MFP_ORYSJ   (Q8W1L6), PAAH_ECOLI  (P76083)
» More

UniProtKB/Swiss-Prot
False negative sequences
19 sequences

CRYL1_PIG   (Q8SQ26), FAD3_RICFE  (Q4UL32), FAD3_RICPR  (Q9ZCZ1), 
FAD3_RICTY  (Q68WH7), FADB2_MYCTO (P9WNP6), FADB2_MYCTU (P9WNP7), 
FADJ_SHEAM  (A1S7L6), FADJ_SHEB5  (A3D684), FADJ_SHEB8  (A6WQ25), 
FADJ_SHEFN  (Q07ZP8), FADJ_SHEHH  (B0TL21), FADJ_SHELP  (A3QFP3), 
FADJ_SHEON  (Q8ECP7), FADJ_SHEPC  (A4Y897), FADJ_SHESA  (A0KV76), 
FADJ_SHESM  (Q0HKD1), FADJ_SHESR  (Q0HWN3), FADJ_SHESW  (A1RI92), 
HCDH_DEIRA  (P83589)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

HBD_CLOPA   (P81343)

		
PDB
[Detailed view]
30 PDB

1F0Y; 1F12; 1F14; 1F17; 1IL0; 1LSJ; 1LSO; 1M76; 1WDK; 1WDL; 1WDM; 1ZCJ; 2D3T; 2HDH; 2WTB; 2X58; 3ADO; 3ADP; 3F3S; 3HAD; 3HDH; 3MOG; 3RQS; 3ZW8; 3ZW9; 3ZWA; 3ZWB; 3ZWC; 4J0E; 4J0F
» More

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