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Entry: PS00067

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General information about the entry

Entry name [info] 3HCDH
Accession [info] PS00067
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00065

Name and characterization of the entry

Description [info] 3-hydroxyacyl-CoA dehydrogenase signature.
Pattern [info]
[DNES]-x(2)-[GA]-F-[LIVMFYA]-x-[NT]-R-x(3)-[PA]-[LIVMFY]-[LIVMFYST]-
x(5,6)-[LIVMFYCT]-[LIVMFYEAH]-x(2)-[GVE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 218 in 218 different sequences
Number of true positive hits 218 in 218 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 19
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 91.98 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
218 sequences

AIM1_ARATH  (Q9ZPI6), CRYL1_BOVIN (Q8SPX7), CRYL1_HUMAN (Q9Y2S2), 
CRYL1_MOUSE (Q99KP3), CRYL1_PONAB (Q5RDZ2), CRYL1_RABIT (P14755), 
CRYL1_RAT   (Q811X6), ECHA_HUMAN  (P40939), ECHA_MOUSE  (Q8BMS1), 
ECHA_PIG    (Q29554), ECHA_RAT    (Q64428), ECHP_DANRE  (Q6NYL3), 
ECHP_HUMAN  (Q08426), ECHP_MOUSE  (Q9DBM2), ECHP_PONAB  (Q5R5M8), 
ECHP_RAT    (P07896), FADB_ACIAD  (Q6FF68), FADB_ACIB3  (B7H1I0), 
FADB_ACIB5  (B7I3P1), FADB_ACIBC  (B2I2J9), FADB_ACIBS  (B0VLX4), 
FADB_ACIBY  (B0VE45), FADB_AERHH  (A0KEL1), FADB_AERS4  (A4STF2), 
FADB_ALISL  (B6EGU2), FADB_CITK8  (A8ACZ4), FADB_COLP3  (Q489W3), 
FADB_CROS8  (A7MQP0), FADB_ECO24  (A7ZU51), FADB_ECO27  (B7UNH4), 
FADB_ECO45  (B7MHD1), FADB_ECO55  (B7L9A7), FADB_ECO57  (Q8X8I2), 
FADB_ECO5E  (B5YY93), FADB_ECO7I  (B7NV20), FADB_ECO81  (B7N2F2), 
FADB_ECO8A  (B7M649), FADB_ECOBW  (C5A020), FADB_ECODH  (B1XAK8), 
FADB_ECOHS  (A8A6V1), FADB_ECOL5  (Q0TAL0), FADB_ECOL6  (Q8FBI2), 
FADB_ECOLC  (B1IW61), FADB_ECOLI  (P21177), FADB_ECOLU  (B7NFE7), 
FADB_ECOSE  (B6I4I6), FADB_ECOSM  (B1LM32), FADB_ECOUT  (Q1R466), 
FADB_ENT38  (A4WFX4), FADB_ENTCL  (Q9F0Y7), FADB_ESCF3  (B7LTY9), 
FADB_IDILO  (Q5QXH7), FADB_KLEP3  (B5XYH0), FADB_KLEP7  (A6TGM4), 
FADB_PECAS  (Q6DAP5), FADB_PHOLL  (Q7MZ92), FADB_PHOPR  (Q6LW06), 
FADB_PSE14  (Q48GW3), FADB_PSEA7  (A6V382), FADB_PSEA8  (B7UYR6), 
FADB_PSEAB  (Q02PH8), FADB_PSEAE  (Q9HZJ2), FADB_PSEE4  (Q1I7D4), 
FADB_PSEF5  (Q4KFC4), FADB_PSEFR  (P28793), FADB_PSEFS  (C3K613), 
FADB_PSEMY  (A4XSM8), FADB_PSEOL  (Q93Q12), FADB_PSEP1  (A5W6H0), 
FADB_PSEPF  (Q3K9D8), FADB_PSEPG  (B0KH74), FADB_PSEPK  (Q88L02), 
FADB_PSEPU  (Q9AHY3), FADB_PSEPW  (B1J5A5), FADB_PSESM  (Q87ZB2), 
FADB_PSEU2  (Q4ZRA0), FADB_PSEU5  (A4VKA3), FADB_PSYA2  (Q4FQC6), 
FADB_PSYCK  (Q1Q8J9), FADB_PSYWF  (A5WH99), FADB_SALA4  (B5EZW0), 
FADB_SALCH  (Q57HM6), FADB_SALEP  (B5QW85), FADB_SALG2  (B5RFL6), 
FADB_SALNS  (B4SZ85), FADB_SALPA  (Q5PKQ2), FADB_SALPB  (A9MYB0), 
FADB_SALPK  (B5BIZ0), FADB_SALSV  (B4TNZ1), FADB_SALTI  (Q8Z3C6), 
FADB_SALTY  (Q9L6L5), FADB_SERP5  (A8G8D1), FADB_SHEAM  (A1S1I8), 
FADB_SHEB2  (B8E3R3), FADB_SHEB5  (A3CYJ4), FADB_SHEB8  (A6WHA0), 
FADB_SHEB9  (A9KU91), FADB_SHEFN  (Q08A39), FADB_SHEHH  (B0TLB9), 
FADB_SHELP  (A3Q8U4), FADB_SHEON  (Q8EKR9), FADB_SHEPA  (A8GYG0), 
FADB_SHEPC  (A4Y1B6), FADB_SHEPW  (B8CH91), FADB_SHESA  (A0KR50), 
FADB_SHESH  (A8FP63), FADB_SHESM  (Q0HPB7), FADB_SHESR  (Q0I0T3), 
FADB_SHESW  (A1RDW6), FADB_SHEWM  (B1KCZ3), FADB_SHIB3  (B2TVJ5), 
FADB_SHIDS  (Q32A21), FADB_SHIF8  (Q0SZ36), FADB_SHIFL  (Q83PG1), 
FADB_SHISS  (Q3YVC1), FADB_VIBC3  (A5F465), FADB_VIBCB  (A7N1D2), 
FADB_VIBCH  (Q9KNI1), FADB_VIBCM  (C3LSI3), FADB_VIBF1  (Q5E8X6), 
FADB_VIBFM  (B5FEW8), FADB_VIBPA  (Q87TN9), FADB_VIBSL  (B7VGL4), 
FADB_VIBVU  (Q8DDK6), FADB_VIBVY  (Q7MQH9), FADB_YERE8  (A1JIG4), 
FADB_YERP3  (A7FDF2), FADB_YERPA  (Q1C2C4), FADB_YERPB  (B2K0Z6), 
FADB_YERPE  (Q8ZAN0), FADB_YERPG  (A9R754), FADB_YERPN  (Q1CN99), 
FADB_YERPP  (A4TR27), FADB_YERPS  (Q66FR8), FADB_YERPY  (B1JP63), 
FADJ_CITK8  (A8ADP2), FADJ_CROS8  (A7MH81), FADJ_ECO24  (A7ZPF8), 
FADJ_ECO27  (B7UFZ8), FADJ_ECO45  (B7MGV7), FADJ_ECO55  (B7LBJ5), 
FADJ_ECO57  (Q8XCP2), FADJ_ECO5E  (B5YXY4), FADJ_ECO7I  (B7NP24), 
FADJ_ECO81  (B7MY16), FADJ_ECO8A  (B7M6M2), FADJ_ECOBW  (C4ZVN2), 
FADJ_ECODH  (B1X9L4), FADJ_ECOHS  (A8A2L0), FADJ_ECOK1  (A1ADI8), 
FADJ_ECOL5  (Q0TFA6), FADJ_ECOL6  (Q8FFG4), FADJ_ECOLC  (B1IXA5), 
FADJ_ECOLI  (P77399), FADJ_ECOLU  (B7N5V2), FADJ_ECOSE  (B6I6Q4), 
FADJ_ECOSM  (B1LME7), FADJ_ECOUT  (Q1R972), FADJ_ENT38  (A4WCW6), 
FADJ_ESCF3  (B7LLD0), FADJ_IDILO  (Q5QXM1), FADJ_KLEP3  (B5XVW2), 
FADJ_KLEP7  (A6TC19), FADJ_PECAS  (Q6D2L7), FADJ_PECCP  (C6DAL7), 
FADJ_PHOLL  (Q7N288), FADJ_PHOPR  (Q6LTK3), FADJ_SALA4  (B5EZR9), 
FADJ_SALCH  (Q57LW6), FADJ_SALDC  (B5FPN1), FADJ_SALEP  (B5R3R9), 
FADJ_SALG2  (B5RCL3), FADJ_SALHS  (B4TCA8), FADJ_SALNS  (B4SZR0), 
FADJ_SALPA  (Q5PCX6), FADJ_SALPB  (A9N453), FADJ_SALPK  (B5BBA1), 
FADJ_SALSV  (B4TQC2), FADJ_SALTI  (Q8Z4Z0), FADJ_SALTY  (Q8ZNA7), 
FADJ_SERP5  (A8GH86), FADJ_SHIB3  (B2TWV4), FADJ_SHIBS  (Q31YB7), 
FADJ_SHIDS  (Q32DJ4), FADJ_SHIF8  (Q0T2E6), FADJ_SHIFL  (Q83QQ0), 
FADJ_SHISS  (Q3YZM2), FADJ_VIBC3  (A5F2P2), FADJ_VIBCB  (A7MS61), 
FADJ_VIBCH  (Q9KT58), FADJ_VIBF1  (Q5E3U1), FADJ_VIBPA  (Q87MM3), 
FADJ_VIBVU  (Q8DB47), FADJ_VIBVY  (Q7MIS5), FADJ_YERE8  (A1JK30), 
FADJ_YERP3  (A7FGK1), FADJ_YERPA  (Q1C660), FADJ_YERPE  (Q8ZD45), 
FADJ_YERPN  (Q1CHK2), FADJ_YERPP  (A4TM82), FADJ_YERPS  (Q668V1), 
HBD_BACSU   (P45856), HBD_BRADU   (Q45223), HBD_CLOAB   (P52041), 
HBD_DEIRA   (Q9RVG1), HBD_PEPDI   (P45364), HBD_THETC   (P77851), 
HCDH1_CAEEL (P34439), HCDH2_CAEEL (P41938), HCDH_HUMAN  (Q16836), 
HCDH_MOUSE  (Q61425), HCDH_PIG    (P00348), HCDH_RAT    (Q9WVK7), 
MFP2_ARATH  (Q9ZPI5), MFPA_BRANA  (O49809), MFPA_CUCSA  (Q39659), 
MFP_ORYSJ   (Q8W1L6), PAAH_ECOLI  (P76083)
» More

UniProtKB/Swiss-Prot
False negative sequences
19 sequences

CRYL1_PIG   (Q8SQ26), FAD3_RICFE  (Q4UL32), FAD3_RICPR  (Q9ZCZ1), 
FAD3_RICTY  (Q68WH7), FADB2_MYCTO (P9WNP6), FADB2_MYCTU (P9WNP7), 
FADJ_SHEAM  (A1S7L6), FADJ_SHEB5  (A3D684), FADJ_SHEB8  (A6WQ25), 
FADJ_SHEFN  (Q07ZP8), FADJ_SHEHH  (B0TL21), FADJ_SHELP  (A3QFP3), 
FADJ_SHEON  (Q8ECP7), FADJ_SHEPC  (A4Y897), FADJ_SHESA  (A0KV76), 
FADJ_SHESM  (Q0HKD1), FADJ_SHESR  (Q0HWN3), FADJ_SHESW  (A1RI92), 
HCDH_DEIRA  (P83589)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

HBD_CLOPA   (P81343)

		
PDB
[Detailed view]
30 PDB

1F0Y; 1F12; 1F14; 1F17; 1IL0; 1LSJ; 1LSO; 1M76; 1WDK; 1WDL; 1WDM; 1ZCJ; 2D3T; 2HDH; 2WTB; 2X58; 3ADO; 3ADP; 3F3S; 3HAD; 3HDH; 3MOG; 3RQS; 3ZW8; 3ZW9; 3ZWA; 3ZWB; 3ZWC; 4J0E; 4J0F
» More

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