Entry: PS00072
General information about the entry
Entry nameACYL_COA_DH_1
Accession numberPS00072
Entry typePATTERN
DateAPR-1990 (CREATED); NOV-1997 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC00070
Name and characterization of the entry
DescriptionAcyl-CoA dehydrogenases signature 1.
Pattern[GAC]-[LIVM]-[ST]-E-x(2)-[GSAN]-G-[ST]-D-x(2)-[GSA].
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 112 hits in 112 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 109 hits in 109 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 3 hits in 3 different sequences
  • Number of known missed hits: 17
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 97.32 %
  • Recall (true hits / (true hits + false negatives)): 86.51 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
ACAD1_CAEBR (A8XNF0), ACAD2_CAEBR (A8WP91), ACAD8_BOVIN (Q0NXR6), 
ACAD8_DICDI (Q54IM8), ACAD8_HUMAN (Q9UKU7), ACAD8_MOUSE (Q9D7B6), 
ACAD9_HUMAN (Q9H845), ACAD9_MOUSE (Q8JZN5), ACADL_HUMAN (P28330), 
ACADL_MACFA (Q60HI0), ACADL_MOUSE (P51174), ACADL_PIG   (P79274), 
ACADL_RAT   (P15650), ACADM_BOVIN (Q3SZB4), ACADM_CAEEL (Q22347), 
ACADM_DROME (Q9VSA3), ACADM_HUMAN (P11310), ACADM_MACFA (Q8HXY8), 
ACADM_MOUSE (P45952), ACADM_PANTR (A5A6I0), ACADM_PIG   (P41367), 
ACADM_RAT   (P08503), ACADS_BOVIN (Q3ZBF6), ACADS_HUMAN (P16219), 
ACADS_MOUSE (Q07417), ACADS_PIG   (P79273), ACADS_PONAB (Q5RAS0), 
ACADS_RAT   (P15651), ACADV_BOVIN (P48818), ACADV_HUMAN (P49748), 
ACADV_MACFA (Q8HXY7), ACADV_MOUSE (P50544), ACADV_RAT   (P45953), 
ACDA_BACSU  (P45867), ACDB_BACSU  (P45857), ACDC_BACSU  (O34421), 
ACDP_MYCBO  (P63428), ACDP_MYCLE  (P46703), ACDP_MYCTU  (P63427), 
ACDSB_BOVIN (Q5EAD4), ACDSB_DICDI (Q54RR5), ACDSB_HUMAN (P45954), 
ACDSB_MOUSE (Q9DBL1), ACDSB_PONAB (Q5RF40), ACDSB_RAT   (P70584), 
ACDS_CLOAB  (P52042), ACDS_MEGEL  (Q06319), ACOX4_ARATH (Q96329), 
AIDB_ECOLI  (P33224), CAIA_CITK8  (A8ALR4), CAIA_ECO24  (A7ZHD0), 
CAIA_ECO27  (B7UI85), CAIA_ECO45  (B7MAG2), CAIA_ECO55  (B7L4G2), 
CAIA_ECO57  (P60586), CAIA_ECO5E  (B5YYD3), CAIA_ECO7I  (B7NHE3), 
CAIA_ECO81  (B7MNP6), CAIA_ECO8A  (B7M0D6), CAIA_ECOBW  (C4ZPW5), 
CAIA_ECODH  (B1XBG4), CAIA_ECOHS  (A7ZVY9), CAIA_ECOK1  (A1A789), 
CAIA_ECOL5  (Q0TLV0), CAIA_ECOL6  (P60585), CAIA_ECOLC  (B1IRD7), 
CAIA_ECOLI  (P60584), CAIA_ECOLU  (B7N7R4), CAIA_ECOSE  (B6HYZ0), 
CAIA_ECOSM  (B1LFX2), CAIA_ECOUT  (Q1RGF9), CAIA_ESCF3  (B7LWN0), 
CAIA_PROMH  (B4EY23), CAIA_PROSL  (Q8GB20), CAIA_SALA4  (B5F752), 
CAIA_SALAR  (A9MQH5), CAIA_SALCH  (Q57TI8), CAIA_SALDC  (B5FHG7), 
CAIA_SALEP  (B5R1R2), CAIA_SALG2  (B5RGA6), CAIA_SALHS  (B4TIH2), 
CAIA_SALNS  (B4T6J8), CAIA_SALPA  (Q5PIN6), CAIA_SALPB  (A9MYJ9), 
CAIA_SALPC  (C0Q4L5), CAIA_SALPK  (B5BL57), CAIA_SALSV  (B4TWR6), 
CAIA_SALTI  (Q8Z9L2), CAIA_SALTY  (Q8ZRX2), CAIA_SHIDS  (Q32K58), 
CAIA_SHIF8  (Q0T8F5), CAIA_SHIFL  (P60587), CAIA_SHISS  (Q3Z5W9), 
FADE_BACSU  (O32176), GCDH_DICDI  (Q54R47), GCDH_HUMAN  (Q92947), 
GCDH_MACFA  (Q8HXX8), IVD1_SOLTU  (Q9FS88), IVD2_SOLTU  (Q9FS87), 
IVD_ARATH   (Q9SWG0), IVD_BOVIN   (Q3SZI8), IVD_CAEEL   (P34275), 
IVD_HUMAN   (P26440), IVD_MOUSE   (Q9JHI5), IVD_PONAB   (Q5RBD5), 
IVD_RAT     (P12007), YDIO_ECO57  (P0A9V0), YDIO_ECOL6  (P0A9U9), 
YDIO_ECOLI  (P0A9U8)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
ACD10_HUMAN (Q6JQN1), ACD10_MOUSE (Q8K370), ACDC_MYCBO  (Q7U0Y2), 
ACDC_MYCTU  (P71539), BBSG_THAAR  (Q9KJE8), FADE_ECOLI  (Q47146), 
GCDH_BOVIN  (Q2KHZ9), GCDH_CAEEL  (Q20772), GCDH_MOUSE  (Q60759), 
GCDH_PIG    (P81140), MBTN_MYCBO  (P63432), MBTN_MYCPA  (Q73ZP8), 
MBTN_MYCSS  (Q1BBA3), MBTN_MYCTU  (P63431), Y873_MYCTU  (P63429), 
Y897_MYCBO  (P63430), YDBM_BACSU  (P96608)
False positive hits (sequences which do not belong to the set under consideration):
IWS1_MOUSE  (Q8C1D8), LEA3_ORYSI  (A2Y720), LEA3_ORYSJ  (P0C5A4)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
1BUC; 1EGC; 1EGD; 1EGE; 1IVH; 1JQI; 1RX0; 1SIQ; 1SIR; 1T9G; 1UDY; 2A1T; 2IX5; 2IX6; 2JIF; 2R0M; 2R0N; 2UXW; 2VIG; 3B96; 3DJL; 3MDD; 3MDE; 3U33;

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View entry in raw text format (no links)
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