Entry: PS00073

General information about the entry
Entry name ACYL_COA_DH_2
Accession number PS00073
Entry type PATTERN
Date APR-1990 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00070
Name and characterization of the entry
DescriptionAcyl-CoA dehydrogenases signature 2.
Pattern [QDE]-x-{P}-G-[GS]-x-G-[LIVMFY]-x(2)-[DEN]-x(4)-[KR]-x(3)-[DEN].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 113 hits in 113 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 107 hits in 107 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 6 hits in 6 different sequences
  • Number of known missed hits: 20
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 94.69 %
  • Recall (true hits / (true hits + false negatives)): 84.25 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
ACAD1_CAEBR (A8XNF0), ACAD8_DICDI (Q54IM8), ACAD9_HUMAN (Q9H845), 
ACAD9_MOUSE (Q8JZN5), ACADL_HUMAN (P28330), ACADL_MACFA (Q60HI0), 
ACADL_MOUSE (P51174), ACADL_PIG   (P79274), ACADL_RAT   (P15650), 
ACADM_BOVIN (Q3SZB4), ACADM_CAEEL (Q22347), ACADM_DROME (Q9VSA3), 
ACADM_HUMAN (P11310), ACADM_MACFA (Q8HXY8), ACADM_MOUSE (P45952), 
ACADM_PANTR (A5A6I0), ACADM_PIG   (P41367), ACADM_RAT   (P08503), 
ACADS_BOVIN (Q3ZBF6), ACADS_HUMAN (P16219), ACADS_MOUSE (Q07417), 
ACADS_PIG   (P79273), ACADS_PONAB (Q5RAS0), ACADS_RAT   (P15651), 
ACADV_BOVIN (P48818), ACADV_HUMAN (P49748), ACADV_MACFA (Q8HXY7), 
ACADV_MOUSE (P50544), ACADV_RAT   (P45953), ACDA_BACSU  (P45867), 
ACDB_BACSU  (P45857), ACDC_BACSU  (O34421), ACDP_MYCBO  (P63428), 
ACDP_MYCLE  (P46703), ACDP_MYCTU  (P63427), ACDSB_HUMAN (P45954), 
ACDSB_MOUSE (Q9DBL1), ACDSB_PONAB (Q5RF40), ACDSB_RAT   (P70584), 
ACDS_CLOAB  (P52042), ACDS_MEGEL  (Q06319), ACOX4_ARATH (Q96329), 
AIDB_ECOLI  (P33224), CAIA_CITK8  (A8ALR4), CAIA_ECO24  (A7ZHD0), 
CAIA_ECO27  (B7UI85), CAIA_ECO45  (B7MAG2), CAIA_ECO55  (B7L4G2), 
CAIA_ECO57  (P60586), CAIA_ECO5E  (B5YYD3), CAIA_ECO7I  (B7NHE3), 
CAIA_ECO81  (B7MNP6), CAIA_ECO8A  (B7M0D6), CAIA_ECOBW  (C4ZPW5), 
CAIA_ECODH  (B1XBG4), CAIA_ECOHS  (A7ZVY9), CAIA_ECOK1  (A1A789), 
CAIA_ECOL5  (Q0TLV0), CAIA_ECOL6  (P60585), CAIA_ECOLC  (B1IRD7), 
CAIA_ECOLI  (P60584), CAIA_ECOLU  (B7N7R4), CAIA_ECOSE  (B6HYZ0), 
CAIA_ECOSM  (B1LFX2), CAIA_ECOUT  (Q1RGF9), CAIA_ESCF3  (B7LWN0), 
CAIA_PROMH  (B4EY23), CAIA_PROSL  (Q8GB20), CAIA_SALA4  (B5F752), 
CAIA_SALAR  (A9MQH5), CAIA_SALCH  (Q57TI8), CAIA_SALDC  (B5FHG7), 
CAIA_SALEP  (B5R1R2), CAIA_SALG2  (B5RGA6), CAIA_SALHS  (B4TIH2), 
CAIA_SALNS  (B4T6J8), CAIA_SALPA  (Q5PIN6), CAIA_SALPB  (A9MYJ9), 
CAIA_SALPC  (C0Q4L5), CAIA_SALPK  (B5BL57), CAIA_SALSV  (B4TWR6), 
CAIA_SALTI  (Q8Z9L2), CAIA_SALTY  (Q8ZRX2), CAIA_SHIDS  (Q32K58), 
CAIA_SHIF8  (Q0T8F5), CAIA_SHIFL  (P60587), CAIA_SHISS  (Q3Z5W9), 
FADE_BACSU  (O32176), GCDH_BOVIN  (Q2KHZ9), GCDH_CAEEL  (Q20772), 
GCDH_DICDI  (Q54R47), GCDH_HUMAN  (Q92947), GCDH_MACFA  (Q8HXX8), 
GCDH_MOUSE  (Q60759), GCDH_PIG    (P81140), IVD1_SOLTU  (Q9FS88), 
IVD2_SOLTU  (Q9FS87), IVD_ARATH   (Q9SWG0), IVD_BOVIN   (Q3SZI8), 
IVD_CAEEL   (P34275), IVD_HUMAN   (P26440), IVD_MOUSE   (Q9JHI5), 
IVD_PONAB   (Q5RBD5), IVD_RAT     (P12007), YDIO_ECO57  (P0A9V0), 
YDIO_ECOL6  (P0A9U9), YDIO_ECOLI  (P0A9U8)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
ACAD8_BOVIN (Q0NXR6), ACAD8_HUMAN (Q9UKU7), ACAD8_MOUSE (Q9D7B6), 
ACD10_HUMAN (Q6JQN1), ACD10_MOUSE (Q8K370), ACDC_MYCBO  (Q7U0Y2), 
ACDC_MYCTU  (P71539), ACDSB_BOVIN (Q5EAD4), ACDSB_DICDI (Q54RR5), 
ACD_DESML   (C3UVB0), BBSG_THAAR  (Q9KJE8), FADE_ECOLI  (Q47146), 
MBTN_MYCBO  (P63432), MBTN_MYCPA  (Q73ZP8), MBTN_MYCSS  (Q1BBA3), 
MBTN_MYCTU  (P63431), NAO_FUSOX   (Q8X1D8), Y873_MYCTU  (P63429), 
Y897_MYCBO  (P63430), YDBM_BACSU  (P96608)
False positive hits (sequences which do not belong to the set under consideration):
EIF3J_KLULA (Q6CMJ8), LAMB_SERP5  (A8GKC3), NCAP_ISAV8  (Q8V3T7), 
PP392_ARATH (Q3E9F0), PPR18_ARATH (Q9M9X9), SYL_EHRCR   (Q2GG41)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1BUC; 1EGC; 1EGD; 1EGE; 1IVH; 1JQI; 1SIQ; 1SIR; 1T9G; 1UDY; 2A1T; 2IX5; 2IX6; 2JIF; 2R0M; 2R0N; 2UXW; 2VIG; 3B96; 3DJL; 3MDD; 3MDE; 3U33;

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