Entry: PS00078

General information about the entry

Entry name [info] COX2
Accession [info] PS00078
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); NOV-1997 (DATA UPDATE); APR-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00075

Name and characterization of the entry

Description [info] CO II and nitrous oxide reductase dinuclear copper centers signature.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_06 which contains 548'586 sequence entries.

Total number of hits 325 in 325 different sequences
Number of true positive hits 325 in 325 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 15
Number of 'partial' sequences 9
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 95.59 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] copper at position 3
Site [info] copper at position 5
Site [info] copper at position 7
Site [info] copper at position 9
Version [info] 1

Cross-references [info]

True positive sequences
325 sequences

AOX2_AERPE  (Q9YDX7), COX1_ACACA  (Q37370), COX1_DICCI  (Q2LCQ6), 
COX1_DICDI  (O21042), COX2_ACHDO  (P29870), COX2_ACOIG  (Q38S50), 
COX2_ACOWI  (P50672), COX2_ADABI  (P29871), COX2_AEDAE  (P50692), 
COX2_AILFU  (Q3L6W7), COX2_AILME  (Q2Y0B9), COX2_ALBCA  (P48889), 
COX2_ALBTU  (Q09334), COX2_ALLMI  (O47870), COX2_ALOPA  (P98024), 
COX2_ANAPL  (P98019), COX2_ANIIM  (Q38S38), COX2_ANOGA  (P34840), 
COX2_ANOQU  (P33505), COX2_ANTAM  (Q37369), COX2_AOTNI  (Q7IC90), 
COX2_APIFL  (P50267), COX2_APIKO  (P50268), COX2_APILI  (P20375), 
COX2_APOMY  (Q38S35), COX2_APOSM  (Q38S29), COX2_APOSY  (P50673), 
COX2_APTAU  (O03889), COX2_ARATH  (P93285), COX2_ARTSF  (Q37706), 
COX2_ARVSO  (Q38S26), COX2_ASCSU  (P24882), COX2_ASHGO  (Q7YFV7), 
COX2_ATEMI  (Q7J6G4), COX2_BACP3  (Q03438), COX2_BACPE  (Q04441), 
COX2_BACSU  (P24011), COX2_BALBO  (Q599A0), COX2_BALMU  (P41294), 
COX2_BALPH  (P24986), COX2_BATGR  (Q38S23), COX2_BERBO  (Q38S20), 
COX2_BETVU  (P98012), COX2_BISBI  (Q37416), COX2_BISBO  (P68296), 
COX2_BOSGA  (P68295), COX2_BOSIN  (P68553), COX2_BOSJA  (P68294), 
COX2_BOSMU  (P68554), COX2_BOSTR  (Q37419), COX2_BOVIN  (P68530), 
COX2_BRAFL  (O47428), COX2_BRAHY  (Q9GCE7), COX2_BRALA  (O79417), 
COX2_BREAN  (P43369), COX2_BRECS  (P43370), COX2_BRENA  (P43372), 
COX2_BUBDE  (P50678), COX2_CAEBR  (Q8HEC3), COX2_CAEEL  (P24894), 
COX2_CAERE  (Q8SEM9), COX2_CAIMO  (P50666), COX2_CALGO  (P50661), 
COX2_CANAD  (O47667), COX2_CANAL  (Q9B8D8), COX2_CANAU  (O47669), 
COX2_CANFA  (P67780), COX2_CANGA  (P43373), COX2_CANLA  (P67781), 
COX2_CANLU  (P67782), COX2_CANME  (O47671), COX2_CANSI  (P98031), 
COX2_CAPHI  (Q37430), COX2_CARAU  (O78682), COX2_CASBE  (O03890), 
COX2_CAVAP  (P50683), COX2_CERGA  (P98020), COX2_CERSI  (O03851), 
COX2_CERTH  (O47672), COX2_CHEME  (P98027), COX2_CHICK  (P18944), 
COX2_CHLAE  (P26455), COX2_CHOBI  (P98025), COX2_CHOCR  (P48869), 
COX2_CHOFU  (P84288), COX2_CHOOC  (P84289), COX2_CHOPI  (P84290), 
COX2_CHORO  (P98030), COX2_CHRBR  (O47670), COX2_CONPN  (Q38S17), 
COX2_COTJA  (P50684), COX2_CRABU  (P50685), COX2_CRACA  (P50662), 
COX2_CTEFE  (P29872), COX2_CULQU  (P50693), COX2_CUOAL  (O47668), 
COX2_CYACA  (P48870), COX2_CYBMR  (P47918), COX2_CYBSA  (P06029), 
COX2_CYPCA  (P24987), COX2_DACMI  (Q38S14), COX2_DAMPP  (P50679), 
COX2_DANRE  (Q9MIY7), COX2_DASNO  (P50687), COX2_DAUMA  (P98032), 
COX2_DEBHA  (A9RAG1), COX2_DEKBR  (P43374), COX2_DESAU  (Q38S65), 
COX2_DIDVI  (P41311), COX2_DROAI  (Q85TA0), COX2_DROAL  (P84201), 
COX2_DROAM  (P29856), COX2_DROAT  (P84202), COX2_DROAZ  (P84287), 
COX2_DROBF  (P29859), COX2_DROLO  (P29860), COX2_DROME  (P00408), 
COX2_DROMI  (P67797), COX2_DRONO  (O03891), COX2_DRONR  (P67795), 
COX2_DROPE  (P67798), COX2_DROPS  (P67799), COX2_DROSI  (P50253), 
COX2_DROSU  (P29865), COX2_DROTO  (P67796), COX2_DROYA  (P00409), 
COX2_DUGDU  (Q8W9N3), COX2_EENNA  (P43375), COX2_ELEMA  (Q2I3H1), 
COX2_EMEND  (P13588), COX2_EQUAS  (P92478), COX2_EULMA  (P98033), 
COX2_EXERO  (P29873), COX2_FELCA  (P48890), COX2_FORLA  (P34189), 
COX2_GADMO  (Q37741), COX2_GALME  (P29874), COX2_GALSE  (P50688), 
COX2_GALVR  (P50686), COX2_GAZSP  (P50680), COX2_GEOCP  (P50689), 
COX2_GERGE  (Q38S62), COX2_GERRO  (Q38S56), COX2_GERVA  (Q37476), 
COX2_GORBE  (Q37472), COX2_GORGO  (P26456), COX2_HALGR  (P38596), 
COX2_HAPGR  (P98034), COX2_HIPAM  (Q9ZZY8), COX2_HORSE  (P48660), 
COX2_HUMAN  (P00403), COX2_HYBUN  (Q38S11), COX2_HYLLA  (Q96127), 
COX2_HYLPR  (Q38S08), COX2_HYLSY  (P25312), COX2_KLULA  (P20387), 
COX2_LACK1  (Q9XLW8), COX2_LACTC  (P43376), COX2_LAGLA  (P98036), 
COX2_LASSP  (P29875), COX2_LATCH  (O03848), COX2_LEGFO  (Q38S05), 
COX2_LEITA  (P14545), COX2_LEMBA  (Q38S02), COX2_LEMCA  (P98035), 
COX2_LEOSA  (Q38S00), COX2_LOCMI  (P14573), COX2_LOPFL  (Q38S47), 
COX2_LOXAF  (Q9TA26), COX2_LUMTE  (Q37545), COX2_LYCCU  (O47676), 
COX2_LYCGR  (O48267), COX2_LYCPI  (O47674), COX2_LYCSE  (O47678), 
COX2_LYCSM  (O79549), COX2_LYCVE  (Q7J6G2), COX2_MACCA  (Q37548), 
COX2_MACFA  (P11948), COX2_MACMU  (P98038), COX2_MACRO  (P92662), 
COX2_MAIZE  (P00412), COX2_MALLO  (Q38RZ7), COX2_MALTY  (Q37547), 
COX2_MAMPR  (Q38PR9), COX2_MANLE  (P98037), COX2_MARPO  (P26857), 
COX2_MAXBA  (Q38RZ2), COX2_MAXSU  (Q38RY9), COX2_MERSH  (Q38S59), 
COX2_METSE  (O47496), COX2_MICNA  (Q38S41), COX2_MICPE  (P24988), 
COX2_MICTV  (Q7IKU8), COX2_MOUSE  (P00405), COX2_MYCBO  (P63855), 
COX2_MYCTU  (P9WP69), COX2_MYTED  (Q00227), COX2_MYXGL  (Q9G2X2), 
COX2_NEUCR  (P00411), COX2_NIVCU  (Q38RY6), COX2_NOCFA  (Q5YZ37), 
COX2_NOTPE  (O03892), COX2_NYCCO  (P98039), COX2_NYCPR  (O47675), 
COX2_OENBE  (P05490), COX2_OENHY  (Q38RY0), COX2_ONCFA  (P29876), 
COX2_ONCMY  (P48171), COX2_ORNAN  (Q37718), COX2_PANPA  (P26457), 
COX2_PANTR  (P50690), COX2_PAPAN  (P68297), COX2_PAPHA  (P68298), 
COX2_PARDE  (P08306), COX2_PARLI  (P12701), COX2_PARTE  (P08749), 
COX2_PATPE  (Q37411), COX2_PELSU  (O79673), COX2_PERAM  (P29877), 
COX2_PERFA  (Q37595), COX2_PETMA  (Q37604), COX2_PHOVI  (Q00528), 
COX2_PHYHA  (Q37596), COX2_PHYME  (Q02212), COX2_PIG    (P50667), 
COX2_PISOC  (P25002), COX2_PNECA  (P29163), COX2_PODAN  (P20682), 
COX2_POLOR  (Q96183), COX2_PONAB  (P92693), COX2_PONPY  (Q37605), 
COX2_PRAJA  (Q38RX1), COX2_PRATA  (Q38RW8), COX2_PRATU  (Q38RW5), 
COX2_PROTA  (P98042), COX2_RABIT  (P98049), COX2_RAT    (P00406), 
COX2_RHAPU  (Q38RV6), COX2_RHEAM  (O03893), COX2_RHIDA  (Q37643), 
COX2_RHISA  (O99819), COX2_RHIUN  (Q96190), COX2_RHOSH  (Q03736), 
COX2_RHYIS  (Q38RV3), COX2_RICBR  (Q1RI44), COX2_RICCN  (Q92I65), 
COX2_RICFE  (Q4ULU3), COX2_RICPR  (Q9ZDC6), COX2_ROULE  (Q37649), 
COX2_RUSUN  (Q37440), COX2_SACEX  (P43377), COX2_SALSA  (Q37677), 
COX2_SCHGR  (P29878), COX2_SCHPO  (P21534), COX2_SCICA  (P50691), 
COX2_SCYCA  (O79404), COX2_SIMVI  (P98021), COX2_SITGR  (P29879), 
COX2_SMICU  (Q3T4C0), COX2_SPEVE  (O47679), COX2_SQUAC  (Q9ZZ51), 
COX2_STRAW  (Q82AL0), COX2_STRCA  (O21400), COX2_STRCO  (Q9X814), 
COX2_STRPU  (P15545), COX2_SUNME  (Q38RU7), COX2_SYMST  (P29880), 
COX2_SYNCA  (P50675), COX2_SYNY3  (Q06474), COX2_TACSP  (Q37691), 
COX2_TAMAM  (Q7IZ21), COX2_TAMBU  (Q7IZ16), COX2_TAMCA  (Q7IZ15), 
COX2_TAMCI  (Q7IZ14), COX2_TAMDO  (Q7IZ11), COX2_TAMMR  (Q7IZ08), 
COX2_TAMPL  (Q7IZ01), COX2_TAMQA  (Q9G5S9), COX2_TAMRF  (Q9G1N5), 
COX2_TAMSO  (Q9G0U1), COX2_TAMTO  (Q9G185), COX2_TARBA  (P98043), 
COX2_TARSY  (P98046), COX2_TATEM  (Q38S53), COX2_TETNG  (Q4JQI4), 
COX2_THEGE  (P98044), COX2_THET8  (Q5SJ80), COX2_THETH  (P98052), 
COX2_THEVL  (P98054), COX2_TINMA  (O03895), COX2_TRAIM  (Q37685), 
COX2_TRIRU  (Q01556), COX2_TRYBB  (P04372), COX2_TRYCR  (P98023), 
COX2_TUPGL  (Q37684), COX2_UROCA  (Q38RU4), COX2_UROCI  (O48276), 
COX2_USTMA  (Q0H8Y7), COX2_VANPO  (A6H4Q5), COX2_VARVI  (P98047), 
COX2_VIGUN  (P32646), COX2_VULCO  (Q539C6), COX2_VULMA  (O47680), 
COX2_VULVU  (O47681), COX2_VULZE  (O47673), COX2_WHEAT  (P00413), 
COX2_WICCA  (P48871), COX2_XENLA  (P00407), COX2_YARLI  (Q9B6D5), 
COX2_YEAST  (P00410), COX2_YPOMA  (P98048), COX2_ZELHI  (Q38RU1), 
COX2_ZOOAN  (P29881), COXM_BRADU  (P98053), COXT_SOYBN  (Q02226), 
NOSZ_PSEST  (P19573)
» More

False negative sequences
15 sequences

COX2_DAUCA  (P27168), COX2_LYCGY  (O47677), COX2_ORYSJ  (P04373), 
COX2_PARPR  (P08748), COX2_PEA    (P08744), COX2_SHEEP  (O78750), 
COX2_SOYBN  (P05491), NOSZ_ACHCY  (P94127), NOSZ_BRADU  (Q89XJ6), 
» More

'Partial' sequences
9 sequences

COX2_AMICA  (P29655), COX2_ATRSP  (P29656), COX2_GEOSD  (P29657), 
COX2_GOMVA  (P29658), COX2_LEPOC  (P29659), COX2_MEGAT  (P29660), 
COX2_POLSX  (P29661), COX2_SCAPL  (P29662), COX2_SOLTU  (P80498)
» More

[Detailed view]
78 PDB

1AR1; 1EHK; 1M56; 1M57; 1OCC; 1OCO; 1OCR; 1OCZ; 1QLE; 1V54; 1V55; 1XME; 2CUA; 2DYR; 2DYS; 2EIJ; 2EIK; 2EIL; 2EIM; 2EIN; 2FWL; 2GSM; 2LLN; 2OCC; 2QPD; 2QPE; 2Y69; 2YBB; 2ZXW; 3ABK; 3ABL; 3ABM; 3AG1; 3AG2; 3AG3; 3AG4; 3ASN; 3ASO; 3BVD; 3DTU; 3EH3; 3EH4; 3EH5; 3EHB; 3FYE; 3FYI; 3HB3; 3QJQ; 3QJR; 3QJS; 3QJT; 3QJU; 3QJV; 3S33; 3S38; 3S39; 3S3A; 3S3B; 3S3C; 3S3D; 3S8F; 3S8G; 3SBP; 3SBQ; 3SBR; 3WG7; 4FA7; 4FAA; 4G70; 4G71; 4G72; 4G7Q; 4G7R; 4G7S; 4GP4; 4GP5; 4GP8; 4N4Y
» More

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