Entry: PS00082

General information about the entry

Entry name [info] EXTRADIOL_DIOXYGENAS
Accession [info] PS00082
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED; 01-NOV-1995 DATA UPDATE; 05-JUL-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00078

Name and characterization of the entry

Description [info] Extradiol ring-cleavage dioxygenases signature.
Pattern [info] 
[GNTIV]-x-H-x(5,7)-[LIVMF]-Y-x(2)-[DENTA]-P-x-[GP]-x(2,3)-E.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_07 which contains 555'100 sequence entries.


Total number of hits 29 in 29 different sequences
Number of true positive hits 26 in 26 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 4
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 89.66 %
Recall (true positives / (true positives + false negatives)) 86.67 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] iron at position 13
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 26 sequences 

BPHC1_RHOGO (P47231    ), BPHC2_RHOGO (P47232    ), BPHC3_RHOGO (P47233    ), 

BPHC_PARXL  (P47228    ), BPHC_PSEPS  (P08695    ), BPHC_PSES1  (P17297    ), 
BPHC_SPHPI  (P11122    ), CADE_BACSU  (P54721    ), CATA_RHORH  (Q53034    ), 
DBFB_SPHPI  (P47243    ), DMPB_PSEUF  (P17262    ), HSAC_MYCTO  (P9WNW6    ), 
HSAC_MYCTU  (P9WNW7    ), HSAC_RHOJR  (Q9KWQ5    ), MPC2_CUPNE  (P17296    ), 
NAHC1_PSEPU (P11861    ), NAHC2_PSEPU (P0A109    ), NAHC_PSEAI  (P0A107    ), 
NAHC_PSEU8  (P0A108    ), NAHH_PSEPU  (P08127    ), NSAC_SPHXE  (P74836    ), 
PHEB_GEOSE  (P31003    ), TODE_PSEP1  (P13453    ), XYLE1_PSEPU (P06622    ), 
XYLE2_PSEPU (Q04285    ), XYLE_PSEAI  (P27887    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 4 sequences 

LINE_SPHPI  (Q9WXE6    ), MHQA_BACSU  (O34689    ), MHQE_BACSU  (O34543    ), 

MHQO_BACSU  (P96693    )
» more

UniProtKB/Swiss-Prot
False positive sequences		 3 sequences 

BAME_NITEU  (Q82WP8    ), GLGB3_ARATH (D2WL32    ), GRF8_ARATH  (Q9SU44    )


				
	

	

		PDB
[Detailed view]		
		
			24 PDB
			


			1DHY; 1EIL; 1EIQ; 1EIR; 1HAN; 1KMY; 1KND; 1KNF; 1KW3; 1KW6; 1KW8; 1KW9; 
			
				1KWB; 1KWC; 1LGT; 1LKD; 1MPY; 2EHZ; 2EI0; 2EI1; 2EI2; 2EI3; 2ZI8; 2ZYQ
			
			

			» more

				
	





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