Entry: PS00082

General information about the entry
Entry name EXTRADIOL_DIOXYGENAS
Accession number PS00082
Entry type PATTERN
Date APR-1990 (CREATED); NOV-1995 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00078
Name and characterization of the entry
DescriptionExtradiol ring-cleavage dioxygenases signature.
Pattern [GNTIV]-x-H-x(5,7)-[LIVMF]-Y-x(2)-[DENTA]-P-x-[GP]-x(2,3)-E.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 25 hits in 25 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 24 hits in 24 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 4
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 96.00 %
  • Recall (true hits / (true hits + false negatives)): 85.71 %
Comments
  • Taxonomic range: Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 13,iron
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
BPHC1_RHOGO (P47231), BPHC2_RHOGO (P47232), BPHC3_RHOGO (P47233), 
BPHC_BURXL  (P47228), BPHC_PSEPA  (P11122), BPHC_PSEPS  (P08695), 
BPHC_PSES1  (P17297), CADE_BACSU  (P54721), CATA_RHORH  (Q53034), 
DBFB_PSEPA  (P47243), DMPB_PSEUF  (P17262), HSAC_MYCTU  (P96850), 
HSAC_RHOSR  (Q9KWQ5), MPC2_CUPNE  (P17296), NAHC1_PSEPU (P11861), 
NAHC2_PSEPU (P0A109), NAHC_PSEAI  (P0A107), NAHC_PSEU8  (P0A108), 
NAHH_PSEPU  (P08127), PHEB_GEOSE  (P31003), TODE_PSEP1  (P13453), 
XYLE1_PSEPU (P06622), XYLE2_PSEPU (Q04285), XYLE_PSEAI  (P27887)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
LINE_PSEPA  (Q9WXE6), MHQA_BACSU  (O34689), MHQE_BACSU  (O34543), 
MHQO_BACSU  (P96693)
False positive hits (sequences which do not belong to the set under consideration):
BAME_NITEU  (Q82WP8)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1DHY; 1EIL; 1EIQ; 1EIR; 1HAN; 1KMY; 1KND; 1KNF; 1KW3; 1KW6; 1KW8; 1KW9; 1KWB; 1KWC; 1LGT; 1LKD; 1MPY; 2EHZ; 2EI0; 2EI1; 2EI2; 2EI3; 2ZI8; 2ZYQ;

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