Entry: PS00089

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General information about the entry

Entry name [info] RIBORED_LARGE
Accession [info] PS00089
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2001 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00084

Name and characterization of the entry

Description [info] Ribonucleotide reductase large subunit signature.
Pattern [info]
W-x(2)-[LIVF]-x(6,7)-G-[LIVM]-[FYRA]-[NH]-x(3)-[STAQLIVM]-[ASC]-x(2)-
[PA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_09 which contains 546'439 sequence entries.


Total number of hits 88 in 88 different sequences
Number of true positive hits 75 in 75 different sequences
Number of 'unknown' hits
Number of false positive hits 13 in 13 different sequences
Number of false negative sequences 3
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 85.23 %
Recall (true positives / (true positives + false negatives)) 96.15 %

Comments [info]

Taxonomic range [info] Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
75 sequences

NRDEB_BACSU (O31875), NRDEB_BPSPB (O64173), RIR1A_MYCS2 (P0CG99), 
RIR1B_MYCS2 (P0CH00), RIR1_ALHV1  (O36411), RIR1_AQUAE  (O66503), 
RIR1_ARATH  (Q9SJ20), RIR1_ASFB7  (P42491), RIR1_ASFK5  (P0C8H7), 
RIR1_ASFM2  (P26685), RIR1_ASFP4  (P0C8H8), RIR1_ASFWA  (P0C8H9), 
RIR1_BACSU  (P50620), RIR1_BHV1C  (P50646), RIR1_BPT4   (P32282), 
RIR1_BUCAI  (P57276), RIR1_BUCAP  (Q8K9W3), RIR1_BUCBP  (Q89AS4), 
RIR1_CAEEL  (Q03604), RIR1_CHLMU  (Q9PL93), RIR1_CHLPN  (Q9Z6S5), 
RIR1_CHLTR  (O84834), RIR1_CRYPV  (O61065), RIR1_DANRE  (P79732), 
RIR1_DROME  (P48591), RIR1_EBVA8  (P0C702), RIR1_EBVB9  (P03190), 
RIR1_EBVG   (Q3KSU5), RIR1_ECOLI  (P00452), RIR1_EHV1B  (P28846), 
RIR1_EHV4   (P50642), RIR1_ENCCU  (Q8SR37), RIR1_GAHVM  (Q77MS1), 
RIR1_HAEIN  (P43754), RIR1_HCMVA  (P16782), RIR1_HCMVM  (Q6SW87), 
RIR1_HELPJ  (Q9ZLF9), RIR1_HELPY  (P55982), RIR1_HHV11  (P08543), 
RIR1_HHV23  (P09853), RIR1_HHV2H  (P89462), RIR1_HHV6U  (P52343), 
RIR1_HHV6Z  (Q9QJ39), RIR1_HHV7J  (P50641), RIR1_HHV8P  (Q2HR67), 
RIR1_HUMAN  (P23921), RIR1_MOUSE  (P07742), RIR1_MYCBO  (P0A5W9), 
RIR1_MYCGE  (P47473), RIR1_MYCLE  (Q9CBQ0), RIR1_MYCPN  (P78027), 
RIR1_MYCTO  (P9WH74), RIR1_MYCTU  (P9WH75), RIR1_NEUCR  (Q9UW15), 
RIR1_PLAF4  (P50648), RIR1_PLAFG  (P50647), RIR1_PONAB  (Q5R919), 
RIR1_PSHV1  (Q6UDJ2), RIR1_SALTY  (P37426), RIR1_SCHPO  (P36602), 
RIR1_SHV21  (Q01037), RIR1_SUHVK  (P50643), RIR1_SYNY3  (P74240), 
RIR1_TREPA  (O83972), RIR1_TRYBB  (O15909), RIR1_VACCA  (Q76RD8), 
RIR1_VACCC  (P20503), RIR1_VACCW  (P12848), RIR1_VAR67  (P32984), 
RIR1_VZVD   (P09248), RIR1_VZVO   (Q4JQV6), RIR1_YEAST  (P21524), 
RIR3_ECOLI  (P39452), RIR3_SALTY  (Q08698), RIR3_YEAST  (P21672)
» More

UniProtKB/Swiss-Prot
False negative sequences
3 sequences

RIR1_IIV6   (O55716), RIR1_MIMIV  (Q7T6Y8), RIR1_OSHVF  (Q6R7H4)

		
UniProtKB/Swiss-Prot
False positive sequences
13 sequences

NQRB_HAEDU  (Q7VNU8), NQRB_NEIMA  (Q9JVP9), NQRB_NEIMB  (Q9K0M4), 
NQRB_PASMU  (Q9CLB0), NQRB_VIBAL  (Q56587), NQRB_VIBAN  (Q75R63), 
NQRB_VIBCB  (Q9RFW0), NQRB_VIBCH  (Q9KPS2), NQRB_VIBPA  (Q87MA7), 
NQRB_VIBVU  (Q8DBJ5), NQRB_VIBVY  (Q7MIC8), NQRB_YERPE  (Q8ZBZ1), 
Y058_METJA  (Q60366)
» More

PDB
[Detailed view]
52 PDB

1PEM; 1PEO; 1PEQ; 1PEU; 1R1R; 1RLR; 1ZYZ; 1ZZD; 2BQ1; 2CVS; 2CVT; 2CVU; 2CVV; 2CVW; 2CVX; 2CVY; 2EUD; 2R1R; 2WGH; 2X0X; 2XAK; 2XAP; 2XAV; 2XAW; 2XAX; 2XAY; 2XAZ; 2XO4; 2XO5; 2ZLF; 2ZLG; 3HNC; 3HND; 3HNE; 3HNF; 3K8T; 3PAW; 3R1R; 3RSR; 3S87; 3S8A; 3S8B; 3S8C; 3TB9; 3TBA; 3UUS; 4ERM; 4ERP; 4R1R; 5R1R; 6R1R; 7R1R
» More

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