Entry: PS00089

General information about the entry

Entry name [info] RIBORED_LARGE
Accession [info] PS00089
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2001 (DATA UPDATE); JUN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00084

Name and characterization of the entry

Description [info] Ribonucleotide reductase large subunit signature.
Pattern [info]
W-x(2)-[LIVF]-x(6,7)-G-[LIVM]-[FYRA]-[NH]-x(3)-[STAQLIVM]-[ASC]-x(2)-
[PA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_08 which contains 320'201 sequence entries.


Total number of hits 88 in 88 different sequences
Number of true positive hits 75 in 75 different sequences
Number of 'unknown' hits 0
Number of false positive hits 13 in 13 different sequences
Number of false negative sequences 3
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 85.23 %
Recall (true positives / (true positives + false negatives)) 96.15 %

Comments [info]

Taxonomic range [info] Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
75 sequences

NRDEB_BACSU (O31875), NRDEB_BPSPB (O64173), RIR1A_MYCS2 (P0CG99), 
RIR1B_MYCS2 (P0CH00), RIR1_ALHV1  (O36411), RIR1_AQUAE  (O66503), 
RIR1_ARATH  (Q9SJ20), RIR1_ASFB7  (P42491), RIR1_ASFK5  (P0C8H7), 
RIR1_ASFM2  (P26685), RIR1_ASFP4  (P0C8H8), RIR1_ASFWA  (P0C8H9), 
RIR1_BACSU  (P50620), RIR1_BHV1C  (P50646), RIR1_BPT4   (P32282), 
RIR1_BUCAI  (P57276), RIR1_BUCAP  (Q8K9W3), RIR1_BUCBP  (Q89AS4), 
RIR1_CAEEL  (Q03604), RIR1_CHLMU  (Q9PL93), RIR1_CHLPN  (Q9Z6S5), 
RIR1_CHLTR  (O84834), RIR1_CRYPV  (O61065), RIR1_DANRE  (P79732), 
RIR1_DROME  (P48591), RIR1_EBVA8  (P0C702), RIR1_EBVB9  (P03190), 
RIR1_EBVG   (Q3KSU5), RIR1_ECOLI  (P00452), RIR1_EHV1B  (P28846), 
RIR1_EHV4   (P50642), RIR1_ENCCU  (Q8SR37), RIR1_GAHVM  (Q77MS1), 
RIR1_HAEIN  (P43754), RIR1_HCMVA  (P16782), RIR1_HCMVM  (Q6SW87), 
RIR1_HELPJ  (Q9ZLF9), RIR1_HELPY  (P55982), RIR1_HHV11  (P08543), 
RIR1_HHV23  (P09853), RIR1_HHV2H  (P89462), RIR1_HHV6U  (P52343), 
RIR1_HHV6Z  (Q9QJ39), RIR1_HHV7J  (P50641), RIR1_HHV8P  (Q2HR67), 
RIR1_HUMAN  (P23921), RIR1_MOUSE  (P07742), RIR1_MYCBO  (P0A5W9), 
RIR1_MYCGE  (P47473), RIR1_MYCLE  (Q9CBQ0), RIR1_MYCPN  (P78027), 
RIR1_MYCTO  (P9WH74), RIR1_MYCTU  (P9WH75), RIR1_NEUCR  (Q9UW15), 
RIR1_PLAF4  (P50648), RIR1_PLAFG  (P50647), RIR1_PONAB  (Q5R919), 
RIR1_PSHV1  (Q6UDJ2), RIR1_SALTY  (P37426), RIR1_SCHPO  (P36602), 
RIR1_SHV21  (Q01037), RIR1_SUHVK  (P50643), RIR1_SYNY3  (P74240), 
RIR1_TREPA  (O83972), RIR1_TRYBB  (O15909), RIR1_VACCA  (Q76RD8), 
RIR1_VACCC  (P20503), RIR1_VACCW  (P12848), RIR1_VAR67  (P32984), 
RIR1_VZVD   (P09248), RIR1_VZVO   (Q4JQV6), RIR1_YEAST  (P21524), 
RIR3_ECOLI  (P39452), RIR3_SALTY  (Q08698), RIR3_YEAST  (P21672)
» More

UniProtKB/Swiss-Prot
False negative sequences
3 sequences

RIR1_IIV6   (O55716), RIR1_MIMIV  (Q7T6Y8), RIR1_OSHVF  (Q6R7H4)

		
UniProtKB/Swiss-Prot
False positive sequences
13 sequences

NQRB_HAEDU  (Q7VNU8), NQRB_NEIMA  (Q9JVP9), NQRB_NEIMB  (Q9K0M4), 
NQRB_PASMU  (Q9CLB0), NQRB_VIBAL  (Q56587), NQRB_VIBAN  (Q75R63), 
NQRB_VIBCB  (Q9RFW0), NQRB_VIBCH  (Q9KPS2), NQRB_VIBPA  (Q87MA7), 
NQRB_VIBVU  (Q8DBJ5), NQRB_VIBVY  (Q7MIC8), NQRB_YERPE  (Q8ZBZ1), 
Y058_METJA  (Q60366)
» More

PDB
[Detailed view]
52 PDB

1PEM; 1PEO; 1PEQ; 1PEU; 1R1R; 1RLR; 1ZYZ; 1ZZD; 2BQ1; 2CVS; 2CVT; 2CVU; 2CVV; 2CVW; 2CVX; 2CVY; 2EUD; 2R1R; 2WGH; 2X0X; 2XAK; 2XAP; 2XAV; 2XAW; 2XAX; 2XAY; 2XAZ; 2XO4; 2XO5; 2ZLF; 2ZLG; 3HNC; 3HND; 3HNE; 3HNF; 3K8T; 3PAW; 3R1R; 3RSR; 3S87; 3S8A; 3S8B; 3S8C; 3TB9; 3TBA; 3UUS; 4ERM; 4ERP; 4R1R; 5R1R; 6R1R; 7R1R
» More

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