Entry: PS00089

General information about the entry

Entry name [info] RIBORED_LARGE
Accession [info] PS00089
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2001 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00084

Name and characterization of the entry

Description [info] Ribonucleotide reductase large subunit signature.
Pattern [info]
W-x(2)-[LIVF]-x(6,7)-G-[LIVM]-[FYRA]-[NH]-x(3)-[STAQLIVM]-[ASC]-x(2)-
[PA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_05 which contains 551'193 sequence entries.


Total number of hits 88 in 88 different sequences
Number of true positive hits 75 in 75 different sequences
Number of 'unknown' hits 0
Number of false positive hits 13 in 13 different sequences
Number of false negative sequences 3
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 85.23 %
Recall (true positives / (true positives + false negatives)) 96.15 %

Comments [info]

Taxonomic range [info] Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
75 sequences

NRDEB_BACSU (O31875    ), NRDEB_BPSPB (O64173    ), RIR1A_MYCS2 (P0CG99    ), 
RIR1B_MYCS2 (P0CH00    ), RIR1_ALHV1  (O36411    ), RIR1_AQUAE  (O66503    ), 
RIR1_ARATH  (Q9SJ20    ), RIR1_ASFB7  (P42491    ), RIR1_ASFK5  (P0C8H7    ), 
RIR1_ASFM2  (P26685    ), RIR1_ASFP4  (P0C8H8    ), RIR1_ASFWA  (P0C8H9    ), 
RIR1_BACSU  (P50620    ), RIR1_BHV1C  (P50646    ), RIR1_BPT4   (P32282    ), 
RIR1_BUCAI  (P57276    ), RIR1_BUCAP  (Q8K9W3    ), RIR1_BUCBP  (Q89AS4    ), 
RIR1_CAEEL  (Q03604    ), RIR1_CHLMU  (Q9PL93    ), RIR1_CHLPN  (Q9Z6S5    ), 
RIR1_CHLTR  (O84834    ), RIR1_CRYPV  (O61065    ), RIR1_DANRE  (P79732    ), 
RIR1_DROME  (P48591    ), RIR1_EBVA8  (P0C702    ), RIR1_EBVB9  (P03190    ), 
RIR1_EBVG   (Q3KSU5    ), RIR1_ECOLI  (P00452    ), RIR1_EHV1B  (P28846    ), 
RIR1_EHV4   (P50642    ), RIR1_ENCCU  (Q8SR37    ), RIR1_GAHVM  (Q77MS1    ), 
RIR1_HAEIN  (P43754    ), RIR1_HCMVA  (P16782    ), RIR1_HCMVM  (Q6SW87    ), 
RIR1_HELPJ  (Q9ZLF9    ), RIR1_HELPY  (P55982    ), RIR1_HHV11  (P08543    ), 
RIR1_HHV23  (P09853    ), RIR1_HHV2H  (P89462    ), RIR1_HHV6U  (P52343    ), 
RIR1_HHV6Z  (Q9QJ39    ), RIR1_HHV7J  (P50641    ), RIR1_HHV8P  (Q2HR67    ), 
RIR1_HUMAN  (P23921    ), RIR1_MOUSE  (P07742    ), RIR1_MYCBO  (P0A5W9    ), 
RIR1_MYCGE  (P47473    ), RIR1_MYCLE  (Q9CBQ0    ), RIR1_MYCPN  (P78027    ), 
RIR1_MYCTO  (P9WH74    ), RIR1_MYCTU  (P9WH75    ), RIR1_NEUCR  (Q9UW15    ), 
RIR1_PLAF4  (P50648    ), RIR1_PLAFG  (P50647    ), RIR1_PONAB  (Q5R919    ), 
RIR1_PSHV1  (Q6UDJ2    ), RIR1_SALTY  (P37426    ), RIR1_SCHPO  (P36602    ), 
RIR1_SHV21  (Q01037    ), RIR1_SUHVK  (P50643    ), RIR1_SYNY3  (P74240    ), 
RIR1_TREPA  (O83972    ), RIR1_TRYBB  (O15909    ), RIR1_VACCA  (Q76RD8    ), 
RIR1_VACCC  (P20503    ), RIR1_VACCW  (P12848    ), RIR1_VAR67  (P32984    ), 
RIR1_VZVD   (P09248    ), RIR1_VZVO   (Q4JQV6    ), RIR1_YEAST  (P21524    ), 
RIR3_ECOLI  (P39452    ), RIR3_SALTY  (Q08698    ), RIR3_YEAST  (P21672    )
» more

UniProtKB/Swiss-Prot
False negative sequences
3 sequences

RIR1_IIV6   (O55716    ), RIR1_MIMIV  (Q7T6Y8    ), RIR1_OSHVF  (Q6R7H4    )

		
UniProtKB/Swiss-Prot
False positive sequences
13 sequences

NQRB_HAEDU  (Q7VNU8    ), NQRB_NEIMA  (Q9JVP9    ), NQRB_NEIMB  (Q9K0M4    ), 
NQRB_PASMU  (Q9CLB0    ), NQRB_VIBAL  (Q56587    ), NQRB_VIBAN  (Q75R63    ), 
NQRB_VIBCB  (Q9RFW0    ), NQRB_VIBCH  (Q9KPS2    ), NQRB_VIBPA  (Q87MA7    ), 
NQRB_VIBVU  (Q8DBJ5    ), NQRB_VIBVY  (Q7MIC8    ), NQRB_YERPE  (Q8ZBZ1    ), 
Y058_METJA  (Q60366    )
» more

PDB
[Detailed view]
58 PDB

1PEM; 1PEO; 1PEQ; 1PEU; 1R1R; 1RLR; 1ZYZ; 1ZZD; 2BQ1; 2CVS; 2CVT; 2CVU; 2CVV; 2CVW; 2CVX; 2CVY; 2EUD; 2R1R; 2WGH; 2X0X; 2XAK; 2XAP; 2XAV; 2XAW; 2XAX; 2XAY; 2XAZ; 2XO4; 2XO5; 2ZLF; 2ZLG; 3HNC; 3HND; 3HNE; 3HNF; 3K8T; 3PAW; 3R1R; 3RSR; 3S87; 3S8A; 3S8B; 3S8C; 3TB9; 3TBA; 3UUS; 4ERM; 4ERP; 4R1R; 4X3V; 5CNS; 5CNT; 5CNU; 5CNV; 5D1Y; 5R1R; 6R1R; 7R1R
» more

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