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Entry: PS00090

General information about the entry

Entry name [info] NITROGENASE_1_2
Accession [info] PS00090
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED; 01-DEC-1992 DATA UPDATE; 22-NOV-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00085

Name and characterization of the entry

Description [info] Nitrogenases component 1 alpha and beta subunits signature 2.
Pattern [info]
[STANQ]-[ET]-C-x(5)-G-D-[DN]-[LIVMT]-x-[STAGR]-[LIVMFYST].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_11 which contains 556'196 sequence entries.


Total number of hits 75 in 75 different sequences
Number of true positive hits 70 in 70 different sequences
Number of 'unknown' hits 0
Number of false positive hits 5 in 5 different sequences
Number of false negative sequences 13
Number of 'partial' sequences 4
Precision (true positives / (true positives + false positives)) 93.33 %
Recall (true positives / (true positives + false negatives)) 84.34 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] iron_sulfur(?) at position 3
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
70 sequences

ANFD_AZOVI  (P16266    ), ANFD_HELGE  (O68955    ), ANFD_RHOCA  (Q07933    ), 
ANFK_AZOVI  (P16267    ), ANFK_CLOHU  (Q46084    ), ANFK_RHOCA  (Q07935    ), 
NIFD_ACIFR  (P06662    ), NIFD_ALCFA  (Q44045    ), NIFD_AZOBR  (P25313    ), 
NIFD_AZOVI  (P07328    ), NIFD_BRADU  (P06121    ), NIFD_BRASP  (P06120    ), 
NIFD_CLOPA  (P00467    ), NIFD_CYAA5  (O07642    ), NIFD_CYAP8  (Q55029    ), 
NIFD_FRAAL  (Q02452    ), NIFD_HERSE  (P77874    ), NIFD_KLEPN  (P00466    ), 
NIFD_LEPBY  (Q00239    ), NIFD_METBA  (P55170    ), NIFD_METMI  (P0CW50    ), 
NIFD_METMP  (P0CW51    ), NIFD_METTH  (O27605    ), NIFD_METTL  (P20620    ), 
NIFD_METTM  (Q50788    ), NIFD_NOSCO  (P52337    ), NIFD_NOSS1  (P00464    ), 
NIFD_RHICP  (P06769    ), NIFD_RHOCA  (P08717    ), NIFD_SINFN  (P19066    ), 
NIFE_AZOVI  (P08293    ), NIFE_BRADU  (P26506    ), NIFE_CLOPA  (P10996    ), 
NIFE_CYAP8  (O07355    ), NIFE_KLEPN  (P08737    ), NIFE_METBA  (P51755    ), 
NIFE_METMI  (P0CW54    ), NIFE_METMP  (P0CW55    ), NIFE_METTH  (O27607    ), 
NIFE_METTM  (P95297    ), NIFE_NOSS1  (Q44144    ), NIFE_RHILO  (Q98AP4    ), 
NIFE_RHIME  (Q92ZL2    ), NIFE_RHOCA  (P19055    ), NIFE_SINFN  (P55673    ), 
NIFK_ACIFR  (P15052    ), NIFK_AZOBR  (P25314    ), NIFK_AZOVI  (P07329    ), 
NIFK_BRADU  (P20621    ), NIFK_BRASP  (P06122    ), NIFK_CLOPA  (P11347    ), 
NIFK_CYAA5  (O07643    ), NIFK_CYAP8  (Q55030    ), NIFK_HERSE  (P77875    ), 
NIFK_KLEPN  (P09772    ), NIFK_METMI  (P0CW52    ), NIFK_METMP  (P0CW53    ), 
NIFK_METTH  (O27606    ), NIFK_METTM  (P95296    ), NIFK_NOSS1  (P00468    ), 
NIFK_SINFN  (P19067    ), VNFD_AZOCH  (P15332    ), VNFD_AZOPA  (O68953    ), 
VNFD_AZOSA  (O68954    ), VNFD_AZOVI  (P16855    ), VNFK_ANAVT  (Q57302    ), 
VNFK_AZOCH  (P15334    ), VNFK_AZOPA  (O68949    ), VNFK_AZOSA  (O68952    ), 
VNFK_AZOVI  (P16856    )
» more

UniProtKB/Swiss-Prot
False negative sequences
13 sequences

ANFD_CLOHU  (Q46082    ), NIFK_FRAAL  (Q57118    ), NIFK_METBA  (P51754    ), 
NIFN_AZOVI  (P10336    ), NIFN_BRADU  (P26507    ), NIFN_CYAP8  (O07356    ), 
NIFN_HERSE  (O87627    ), NIFN_KLEPN  (P08738    ), NIFN_NOSS1  (Q44145    ), 
NIFN_RHILO  (Q98AP3    ), NIFN_RHIME  (P12781    ), NIFN_RHOCA  (P19077    ), 
NIFN_SINFN  (P55674    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
4 sequences

NIFD_ANASL  (P33177    ), NIFD_METIV  (P51605    ), NIFD_RHILT  (P00465    ), 
NIFK_METTL  (P20622    )
» more

UniProtKB/Swiss-Prot
False positive sequences
5 sequences

E4PD_YERE8  (A1JPR1    ), E4PD_YERPA  (Q1CB62    ), E4PD_YERPE  (Q7CGS4    ), 
E4PD_YERPN  (Q1CEY2    ), E4PD_YERPS  (Q666Q0    )
» more

PDB
[Detailed view]
31 PDB

1FP4; 1G20; 1G21; 1H1L; 1L5H; 1M1N; 1M1Y; 1M34; 1MIO; 1N2C; 1QGU; 1QH1; 1QH8; 2AFH; 2AFI; 2MIN; 3K1A; 3MIN; 3U7Q; 4ND8; 4TKU; 4TKV; 4WES; 4WN9; 4WNA; 4WZA; 4WZB; 4XPI; 5BVG; 5BVH; 5CX1
» more

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