Entry: PS00090

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General information about the entry

Entry name [info] NITROGENASE_1_2
Accession [info] PS00090
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-1992 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00085

Name and characterization of the entry

Description [info] Nitrogenases component 1 alpha and beta subunits signature 2.
Pattern [info]
[STANQ]-[ET]-C-x(5)-G-D-[DN]-[LIVMT]-x-[STAGR]-[LIVMFYST].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 75 in 75 different sequences
Number of true positive hits 70 in 70 different sequences
Number of 'unknown' hits
Number of false positive hits 5 in 5 different sequences
Number of false negative sequences 13
Number of 'partial' sequences 4
Precision (true positives / (true positives + false positives)) 93.33 %
Recall (true positives / (true positives + false negatives)) 84.34 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] iron_sulfur(?) at position 3
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
70 sequences

ANFD_AZOVI  (P16266), ANFD_HELGE  (O68955), ANFD_RHOCA  (Q07933), 
ANFK_AZOVI  (P16267), ANFK_CLOHU  (Q46084), ANFK_RHOCA  (Q07935), 
NIFD_ACIFR  (P06662), NIFD_ALCFA  (Q44045), NIFD_AZOBR  (P25313), 
NIFD_AZOVI  (P07328), NIFD_BRADU  (P06121), NIFD_BRASP  (P06120), 
NIFD_CLOPA  (P00467), NIFD_CYAA5  (O07642), NIFD_CYAP8  (Q55029), 
NIFD_FRAAL  (Q02452), NIFD_HERSE  (P77874), NIFD_KLEPN  (P00466), 
NIFD_LEPBY  (Q00239), NIFD_METBA  (P55170), NIFD_METMI  (P0CW50), 
NIFD_METMP  (P0CW51), NIFD_METTH  (O27605), NIFD_METTL  (P20620), 
NIFD_METTM  (Q50788), NIFD_NOSCO  (P52337), NIFD_NOSS1  (P00464), 
NIFD_RHICP  (P06769), NIFD_RHISN  (P19066), NIFD_RHOCA  (P08717), 
NIFE_AZOVI  (P08293), NIFE_BRADU  (P26506), NIFE_CLOPA  (P10996), 
NIFE_CYAP8  (O07355), NIFE_KLEPN  (P08737), NIFE_METBA  (P51755), 
NIFE_METMI  (P0CW54), NIFE_METMP  (P0CW55), NIFE_METTH  (O27607), 
NIFE_METTM  (P95297), NIFE_NOSS1  (Q44144), NIFE_RHILO  (Q98AP4), 
NIFE_RHIME  (Q92ZL2), NIFE_RHISN  (P55673), NIFE_RHOCA  (P19055), 
NIFK_ACIFR  (P15052), NIFK_AZOBR  (P25314), NIFK_AZOVI  (P07329), 
NIFK_BRADU  (P20621), NIFK_BRASP  (P06122), NIFK_CLOPA  (P11347), 
NIFK_CYAA5  (O07643), NIFK_CYAP8  (Q55030), NIFK_HERSE  (P77875), 
NIFK_KLEPN  (P09772), NIFK_METMI  (P0CW52), NIFK_METMP  (P0CW53), 
NIFK_METTH  (O27606), NIFK_METTM  (P95296), NIFK_NOSS1  (P00468), 
NIFK_RHISN  (P19067), VNFD_AZOCH  (P15332), VNFD_AZOPA  (O68953), 
VNFD_AZOSA  (O68954), VNFD_AZOVI  (P16855), VNFK_ANAVT  (Q57302), 
VNFK_AZOCH  (P15334), VNFK_AZOPA  (O68949), VNFK_AZOSA  (O68952), 
VNFK_AZOVI  (P16856)
» More

UniProtKB/Swiss-Prot
False negative sequences
13 sequences

ANFD_CLOHU  (Q46082), NIFK_FRAAL  (Q57118), NIFK_METBA  (P51754), 
NIFN_AZOVI  (P10336), NIFN_BRADU  (P26507), NIFN_CYAP8  (O07356), 
NIFN_HERSE  (O87627), NIFN_KLEPN  (P08738), NIFN_NOSS1  (Q44145), 
NIFN_RHILO  (Q98AP3), NIFN_RHIME  (P12781), NIFN_RHISN  (P55674), 
NIFN_RHOCA  (P19077)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
4 sequences

NIFD_ANASL  (P33177), NIFD_METIV  (P51605), NIFD_RHILT  (P00465), 
NIFK_METTL  (P20622)
» More

UniProtKB/Swiss-Prot
False positive sequences
5 sequences

E4PD_YERE8  (A1JPR1), E4PD_YERPA  (Q1CB62), E4PD_YERPE  (Q7CGS4), 
E4PD_YERPN  (Q1CEY2), E4PD_YERPS  (Q666Q0)
» More

PDB
[Detailed view]
21 PDB

1FP4; 1G20; 1G21; 1H1L; 1L5H; 1M1N; 1M1Y; 1M34; 1MIO; 1N2C; 1QGU; 1QH1; 1QH8; 2AFH; 2AFI; 2AFK; 2MIN; 3K1A; 3MIN; 3U7Q; 4ND8
» More

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