Entry: PS00090

General information about the entry

Entry name [info] NITROGENASE_1_2
Accession [info] PS00090
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-1992 (DATA UPDATE); MAY-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00085

Name and characterization of the entry

Description [info] Nitrogenases component 1 alpha and beta subunits signature 2.
Pattern [info]
[STANQ]-[ET]-C-x(5)-G-D-[DN]-[LIVMT]-x-[STAGR]-[LIVMFYST].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_07 which contains 548'872 sequence entries.


Total number of hits 75 in 75 different sequences
Number of true positive hits 70 in 70 different sequences
Number of 'unknown' hits 0
Number of false positive hits 5 in 5 different sequences
Number of false negative sequences 13
Number of 'partial' sequences 4
Precision (true positives / (true positives + false positives)) 93.33 %
Recall (true positives / (true positives + false negatives)) 84.34 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] iron_sulfur(?) at position 3
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
70 sequences

ANFD_AZOVI  (P16266), ANFD_HELGE  (O68955), ANFD_RHOCA  (Q07933), 
ANFK_AZOVI  (P16267), ANFK_CLOHU  (Q46084), ANFK_RHOCA  (Q07935), 
NIFD_ACIFR  (P06662), NIFD_ALCFA  (Q44045), NIFD_AZOBR  (P25313), 
NIFD_AZOVI  (P07328), NIFD_BRADU  (P06121), NIFD_BRASP  (P06120), 
NIFD_CLOPA  (P00467), NIFD_CYAA5  (O07642), NIFD_CYAP8  (Q55029), 
NIFD_FRAAL  (Q02452), NIFD_HERSE  (P77874), NIFD_KLEPN  (P00466), 
NIFD_LEPBY  (Q00239), NIFD_METBA  (P55170), NIFD_METMI  (P0CW50), 
NIFD_METMP  (P0CW51), NIFD_METTH  (O27605), NIFD_METTL  (P20620), 
NIFD_METTM  (Q50788), NIFD_NOSCO  (P52337), NIFD_NOSS1  (P00464), 
NIFD_RHICP  (P06769), NIFD_RHISN  (P19066), NIFD_RHOCA  (P08717), 
NIFE_AZOVI  (P08293), NIFE_BRADU  (P26506), NIFE_CLOPA  (P10996), 
NIFE_CYAP8  (O07355), NIFE_KLEPN  (P08737), NIFE_METBA  (P51755), 
NIFE_METMI  (P0CW54), NIFE_METMP  (P0CW55), NIFE_METTH  (O27607), 
NIFE_METTM  (P95297), NIFE_NOSS1  (Q44144), NIFE_RHILO  (Q98AP4), 
NIFE_RHIME  (Q92ZL2), NIFE_RHISN  (P55673), NIFE_RHOCA  (P19055), 
NIFK_ACIFR  (P15052), NIFK_AZOBR  (P25314), NIFK_AZOVI  (P07329), 
NIFK_BRADU  (P20621), NIFK_BRASP  (P06122), NIFK_CLOPA  (P11347), 
NIFK_CYAA5  (O07643), NIFK_CYAP8  (Q55030), NIFK_HERSE  (P77875), 
NIFK_KLEPN  (P09772), NIFK_METMI  (P0CW52), NIFK_METMP  (P0CW53), 
NIFK_METTH  (O27606), NIFK_METTM  (P95296), NIFK_NOSS1  (P00468), 
NIFK_RHISN  (P19067), VNFD_AZOCH  (P15332), VNFD_AZOPA  (O68953), 
VNFD_AZOSA  (O68954), VNFD_AZOVI  (P16855), VNFK_ANAVT  (Q57302), 
VNFK_AZOCH  (P15334), VNFK_AZOPA  (O68949), VNFK_AZOSA  (O68952), 
VNFK_AZOVI  (P16856)
» More

UniProtKB/Swiss-Prot
False negative sequences
13 sequences

ANFD_CLOHU  (Q46082), NIFK_FRAAL  (Q57118), NIFK_METBA  (P51754), 
NIFN_AZOVI  (P10336), NIFN_BRADU  (P26507), NIFN_CYAP8  (O07356), 
NIFN_HERSE  (O87627), NIFN_KLEPN  (P08738), NIFN_NOSS1  (Q44145), 
NIFN_RHILO  (Q98AP3), NIFN_RHIME  (P12781), NIFN_RHISN  (P55674), 
NIFN_RHOCA  (P19077)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
4 sequences

NIFD_ANASL  (P33177), NIFD_METIV  (P51605), NIFD_RHILT  (P00465), 
NIFK_METTL  (P20622)
» More

UniProtKB/Swiss-Prot
False positive sequences
5 sequences

E4PD_YERE8  (A1JPR1), E4PD_YERPA  (Q1CB62), E4PD_YERPE  (Q7CGS4), 
E4PD_YERPN  (Q1CEY2), E4PD_YERPS  (Q666Q0)
» More

PDB
[Detailed view]
27 PDB

1FP4; 1G20; 1G21; 1H1L; 1L5H; 1M1N; 1M1Y; 1M34; 1MIO; 1N2C; 1QGU; 1QH1; 1QH8; 2AFH; 2AFI; 2MIN; 3K1A; 3MIN; 3U7Q; 4ND8; 4TKU; 4TKV; 4WES; 4WN9; 4WNA; 4WZA; 4WZB
» More

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