Entry: PS00093

General information about the entry
Entry name N4_MTASE
Accession number PS00093
Entry type PATTERN
Date APR-1990 (CREATED); JUN-1994 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00088
Name and characterization of the entry
DescriptionN-4 cytosine-specific DNA methylases signature.
Pattern [LIVMF]-T-S-P-P-[FY].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 33 hits in 33 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 20 hits in 20 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 13 hits in 13 different sequences
  • Number of known missed hits: 0
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 60.61 %
  • Recall (true hits / (true hits + false negatives)): 100.00 %
Comments
  • Taxonomic range: Archaea, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
MTA1_ANAVA  (P0A462), MTA1_NOSS1  (P0A461), MTB1_BACSQ  (Q9LAI2), 
MTB1_GEOSE  (P70986), MTB2_BACAM  (P18051), MTB2_BACIU  (Q45489), 
MTC1_CITFR  (Q04845), MTC9_CITFR  (P14243), MTHZ_METTF  (P29568), 
MTM1_METJA  (Q58392), MTM2_METJA  (Q58843), MTM5_METJA  (Q58893), 
MTM6_METJA  (Q58606), MTMV_MICVA  (P14244), MTMW_METWO  (O59647), 
MTP2_PROHU  (P11409), MTS1_STRCS  (O52692), MTS1_STRFI  (O52513), 
MTSM_SERMA  (P14230), MTX1_XANCC  (P30774)
False positive hits (sequences which do not belong to the set under consideration):
CABIN_HUMAN (Q9Y6J0), CABIN_RAT   (O88480), DEF45_ARATH (Q2V3Y8), 
GSH1_ONCVO  (Q9NFN6), MORN1_RAT   (Q641X6), POLN_ONNVG  (P13886), 
POLN_ONNVI  (O90370), POLN_ONNVS  (O90368), RAD16_SCHPO (P36617), 
SMKX_MOUSE  (Q8C0X8), WNK1_MOUSE  (P83741), Y1558_DICDI (Q1ZXI5), 
Y1671_HAEIN (P44287)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1BOO;

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