Entry: PS00170

General information about the entry
Entry name CSA_PPIASE_1
Accession number PS00170
Entry type PATTERN
Date APR-1990 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00154
Name and characterization of the entry
DescriptionCyclophilin-type peptidyl-prolyl cis-trans isomerase signature.
Pattern [FY]-x(2)-[STCNLVA]-x-[FV]-H-[RH]-[LIVMNS]-[LIVM]-x(2)-F-[LIVM]-x-Q- [AGFT]-G.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 242 hits in 242 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 242 hits in 242 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 50
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 5
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 82.88 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CP18C_ARATH (P34790), CP18D_ARATH (Q42406), CP19A_ARATH (Q38900), 
CP19B_ARATH (Q9SKQ0), CP19C_ARATH (Q38867), CP19D_ARATH (Q8LDP4), 
CP20A_ARATH (Q9SP02), CP20B_ARATH (Q9ASS6), CP20C_ARATH (P34791), 
CWC27_ASPFU (Q4WE62), CWC27_BOVIN (Q17QX9), CWC27_DANRE (Q7ZW86), 
CWC27_EMENI (Q5AUG9), CWC27_GIBZE (Q4IPB3), CWC27_HUMAN (Q6UX04), 
CWC27_MACFA (Q4R713), CWC27_MOUSE (Q3TKY6), CWC27_NEUCR (Q7SBX8), 
CWC27_PONAB (Q5R7W3), CWC27_RAT   (Q5XIB2), CWC27_RHIO9 (P0C1J2), 
CWC27_USTMA (Q4P7H2), CWC27_XENLA (Q6GLX7), CYP10_CAEEL (P52017), 
CYP11_CAEEL (P52018), CYP11_RHIO9 (P0C1I9), CYP15_RHIO9 (P0C1J0), 
CYP1_BRUMA  (Q27450), CYP1_CAEEL  (P52009), CYP1_SOYBN  (Q8W171), 
CYP2_CAEEL  (P52010), CYP3_CAEEL  (P52011), CYP40_ARATH (Q9C566), 
CYP4_CAEEL  (P52012), CYP5_CAEEL  (P52013), CYP5_RHIO9  (P0C1I7), 
CYP6_CAEEL  (P52014), CYP6_RHIO9  (P0C1I8), CYP7_CAEEL  (P52015), 
CYP7_SCHPO  (O42941), CYP7_YEAST  (P47103), CYP8_CAEEL  (P52016), 
CYP9_CAEEL  (Q09637), CYP9_SCHPO  (O74942), CYPB_VICFA  (Q41651), 
CYPB_YEAST  (P23285), CYPC_YEAST  (P25719), CYPD_YEAST  (P35176), 
CYPE_DICDI  (Q9NI62), CYPH_ALLCE  (P34887), CYPH_BRANA  (P24525), 
CYPH_CATRO  (Q39613), CYPH_ENCCU  (Q8SRE1), CYPH_LUPLU  (O49886), 
CYPH_MAIZE  (P21569), CYPH_NEUCR  (P10255), CYPH_SCHPO  (P18253), 
CYPH_SOLLC  (P21568), CYPH_UROFA  (O00060), CYPH_YEAST  (P14832), 
CYPR_CALVI  (P28517), CYPR_DROME  (P15425), CYPX_USEUD  (P35627), 
NKTR_HUMAN  (P30414), NKTR_MOUSE  (P30415), PAL4A_HUMAN (Q9Y536), 
PAL4D_HUMAN (F5H284), PAL4G_HUMAN (A2BFH1), PPI1_BRUA2  (Q2YPY5), 
PPI1_BRUAB  (Q57D43), PPI1_BRUME  (Q8YHB5), PPI1_BRUSU  (Q8G0J9), 
PPI1_STAEQ  (Q5HQK8), PPI1_STAES  (Q8CT84), PPI1_STAS1  (Q49W93), 
PPI1_SYNY3  (P72704), PPI2_SYNY3  (P73789), PPIA1_RHIO9 (P0C1H7), 
PPIA2_RHIO9 (P0C1H8), PPIA_ACIAD  (P42693), PPIA_AOTTR  (Q6DTV9), 
PPIA_BLAGE  (P54985), PPIA_BOVIN  (P62935), PPIA_CANAL  (P22011), 
PPIA_CHLAE  (P62938), PPIA_CRIGR  (P14851), PPIA_DICD3  (O53021), 
PPIA_DICDI  (Q54SM3), PPIA_DROME  (P25007), PPIA_ECHGR  (P14088), 
PPIA_ECO57  (P0AFL5), PPIA_ECOL6  (P0AFL4), PPIA_ECOLI  (P0AFL3), 
PPIA_FELCA  (Q8HXS3), PPIA_GORGO  (Q0ZQL0), PPIA_HELPJ  (Q9ZJH5), 
PPIA_HELPY  (O25982), PPIA_HEMPU  (P91791), PPIA_HUMAN  (P62937), 
PPIA_HYLLA  (Q0ZQK8), PPIA_HYLSY  (Q0ZQK6), PPIA_MACMU  (P62940), 
PPIA_MOUSE  (P17742), PPIA_MYCBO  (P65763), PPIA_MYCLE  (Q9CDE9), 
PPIA_MYCTU  (P65762), PPIA_NEOCA  (P84343), PPIA_NOMLE  (Q0ZQK7), 
PPIA_PANPA  (Q0ZQL2), PPIA_PANTR  (Q0ZQL1), PPIA_PAPAN  (P62941), 
PPIA_PARPR  (O00845), PPIA_PIG    (P62936), PPIA_PONPY  (Q5R8S7), 
PPIA_PSEAE  (Q59641), PPIA_RABIT  (Q9TTC6), PPIA_RAT    (P10111), 
PPIA_SAGOE  (Q0ZQK3), PPIA_SALTY  (P20753), PPIA_SCHMA  (Q26565), 
PPIA_STRAQ  (Q06118), PPIB1_RHIO9 (P0C1H9), PPIB2_RHIO9 (P0C1I0), 
PPIB_ARTBE  (O93826), PPIB_ASPFU  (Q4WP12), PPIB_ASPNG  (Q8X166), 
PPIB_ASPOR  (Q2UGK2), PPIB_BACSU  (P35137), PPIB_BOVIN  (P80311), 
PPIB_CHICK  (P24367), PPIB_CRYNB  (P0CP79), PPIB_CRYNJ  (P0CP78), 
PPIB_DICDI  (Q9TW32), PPIB_ECOLI  (P23869), PPIB_EMENI  (Q5B4R3), 
PPIB_GIBZE  (Q4I5R9), PPIB_HAEIN  (P44499), PPIB_HUMAN  (P23284), 
PPIB_MOUSE  (P24369), PPIB_NEUCR  (Q7S7Z6), PPIB_ORPSP  (Q01490), 
PPIB_RAT    (P24368), PPIB_SCHJA  (Q27774), PPIB_SCHMA  (Q26551), 
PPIB_SCHPO  (O94273), PPIB_STRAQ  (P77949), PPIB_STRAT  (P83221), 
PPIB_TREPA  (O66105), PPIB_YARLI  (Q6C4W6), PPIC_BOVIN  (Q08E11), 
PPIC_HUMAN  (P45877), PPIC_MOUSE  (P30412), PPID_AMAMU  (Q5U8Z7), 
PPID_ASHGO  (Q75A33), PPID_ASPFU  (Q4WIF3), PPID_ASPOR  (Q2U0E0), 
PPID_BOVIN  (P26882), PPID_CANAL  (Q5ACI8), PPID_CANGA  (Q6FNU6), 
PPID_DEBHA  (Q6BXZ7), PPID_DICDI  (Q9UA41), PPID_EMENI  (Q5B4E7), 
PPID_GIBZE  (Q4HXF6), PPID_HUMAN  (Q08752), PPID_KLULA  (Q6CL78), 
PPID_MOUSE  (Q9CR16), PPID_NEUCR  (Q9P3X9), PPID_RAT    (Q6DGG0), 
PPID_RHIO9  (P0C1I1), PPID_SCHPO  (Q11004), PPID_USTMA  (Q4P0V4), 
PPID_YARLI  (Q6CBP4), PPID_YEAST  (P53691), PPIE_BOVIN  (A4FV72), 
PPIE_DROME  (Q9V3G3), PPIE_HUMAN  (Q9UNP9), PPIE_MOUSE  (Q9QZH3), 
PPIE_PONAB  (Q5R723), PPIE_RHIO9  (P0C1I2), PPIE_SCHJA  (Q26516), 
PPIE_SCHMA  (Q26548), PPIF_BOVIN  (P30404), PPIF_HUMAN  (P30405), 
PPIF_MOUSE  (Q99KR7), PPIF_RAT    (P29117), PPIG_HUMAN  (Q13427), 
PPIG_MOUSE  (A2AR02), PPIG_RAT    (O55035), PPIH_ASPFU  (Q4WCM6), 
PPIH_ASPOR  (Q2TZ33), PPIH_BOVIN  (Q0P5D0), PPIH_CRYNB  (P0CP83), 
PPIH_CRYNJ  (P0CP82), PPIH_EMENI  (Q5AQL0), PPIH_GIBZE  (Q4IPH4), 
PPIH_HUMAN  (O43447), PPIH_MOUSE  (Q9D868), PPIH_NEUCR  (Q7SG06), 
PPIH_RHIO9  (P0C1I3), PPIH_SCHPO  (O74729), PPIH_USTMA  (Q4P6X6), 
PPIL1_ASPFU (Q4WCR3), PPIL1_ASPNG (Q8X191), PPIL1_ASPOR (Q2U6U0), 
PPIL1_BOVIN (Q5E992), PPIL1_CRYNB (P0CP85), PPIL1_CRYNJ (P0CP84), 
PPIL1_EMENI (Q5ASQ0), PPIL1_GIBZE (Q4I1Y1), PPIL1_HUMAN (Q9Y3C6), 
PPIL1_MOUSE (Q9D0W5), PPIL1_NEUCR (Q7SF72), PPIL1_RHIO9 (P0C1I4), 
PPIL1_SCHPO (P87051), PPIL2_ARATH (Q9FJX0), PPIL2_ASPFU (Q4WVU5), 
PPIL2_ASPOR (Q2U5W8), PPIL2_CRYNB (P0CP91), PPIL2_CRYNJ (P0CP90), 
PPIL2_EMENI (Q5AXT6), PPIL2_GIBZE (Q4IBK5), PPIL2_HUMAN (Q13356), 
PPIL2_MOUSE (Q9D787), PPIL2_NEUCR (Q7RXA6), PPIL2_RHIO9 (P0C1J1), 
PPIL2_SCHPO (Q09928), PPIL2_USTMA (Q4P555), PPIL3_CHICK (Q5ZLV2), 
PPIL3_CRYNB (P0CP87), PPIL3_CRYNJ (P0CP86), PPIL3_DICDI (Q54E95), 
PPIL3_EMENI (Q5BAH7), PPIL3_GIBZE (Q4IPB8), PPIL3_HUMAN (Q9H2H8), 
PPIL3_MOUSE (Q9D6L8), PPIL3_NEUCR (Q6MWS8), PPIL3_RAT   (Q812D3), 
PPI_LOTGI   (B3A0R0), PPI_SYNE7   (P29820), RBP2_BOVIN  (P48820), 
RBP2_HUMAN  (P49792), RBP2_MOUSE  (Q9ERU9)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
BPPI_STRP6  (Q5XAQ1), CP21C_ARATH (Q94A16), CWC27_ASHGO (Q75A74), 
CWC27_CRYNB (P0CP93), CWC27_CRYNJ (P0CP92), CWC27_DEBHA (Q6BWH6), 
CWC27_YARLI (Q6CGK4), CWC27_YEAST (Q02770), CYP37_ARATH (P82869), 
CYP38_ARATH (Q9SSA5), CYP8_YEAST  (P53728), CYP9_CAEBR  (A8X8D0), 
CYPR_YEAST  (P25334), PPI1_STAA3  (Q2FIC1), PPI1_STAA8  (Q2FZU9), 
PPI1_STAAB  (Q2YWT2), PPI1_STAAC  (Q5HHD1), PPI1_STAAM  (Q99VD4), 
PPI1_STAAN  (Q7A6I1), PPI1_STAAR  (Q6GID4), PPI1_STAAS  (Q6GAX2), 
PPI1_STAAW  (Q7A1C0), PPI1_STAHJ  (Q4L4W9), PPI3_SYNY3  (Q55118), 
PPIB_MYCLE  (P46697), PPIB_MYCTU  (Q50639), PPID_CRYNB  (P0CP81), 
PPID_CRYNJ  (P0CP80), PPIL3_RHIO9 (P0C1I5), PPIL3_USTMA (Q4PCH8), 
PPIL4_ASPFU (Q4WAQ9), PPIL4_ASPOR (Q2U256), PPIL4_CRYNB (P0CP89), 
PPIL4_CRYNJ (P0CP88), PPIL4_EMENI (Q5ARI5), PPIL4_GIBZE (Q4IE79), 
PPIL4_HUMAN (Q8WUA2), PPIL4_MOUSE (Q9CXG3), PPIL4_NEUCR (Q871A4), 
PPIL4_RHIO9 (P0C1I6), PPIL4_SCHPO (Q9UUE4), PPIL4_USTMA (P0C196), 
PPIL6_BOVIN (Q1RMP7), PPIL6_HUMAN (Q8IXY8), PPIL6_MOUSE (Q9D6D8), 
PPWD1_BOVIN (Q29RZ2), PPWD1_HUMAN (Q96BP3), PPWD1_MOUSE (Q8CEC6), 
PPWD1_PONAB (Q5NVL7), TLP40_SPIOL (O49939)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
CYPH_BETPN  (P81531), PPIA_NAEFO  (P84342), PPIA_PENGL  (P85444), 
PPIM_MAIZE  (Q10724), TLP20_SPIOL (P82536)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
1A33; 1A58; 1AK4; 1AWQ; 1AWR; 1AWU; 1AWV; 1BCK; 1C5F; 1CLH; 1CWA; 1CWB; 1CWC; 1CWF; 1CWH; 1CWI; 1CWJ; 1CWK; 1CWL; 1CWM; 1CWO; 1CYN; 1DYW; 1E3B; 1E8K; 1FGL; 1H0P; 1IHG; 1IIP; 1IST; 1J2A; 1LOP; 1M63; 1M9C; 1M9D; 1M9E; 1M9F; 1M9X; 1M9Y; 1MD5; 1MF8; 1MIK; 1MZW; 1NMK; 1OCA; 1QOI; 1RMH; 1V9T; 1VAI; 1VBS; 1VBT; 1VDN; 1W74; 1W8L; 1W8M; 1W8V; 1WVS; 1XWN; 1XYH; 1YND; 1ZKC; 1ZKF; 1ZMF; 2ALF; 2BIT; 2BIU; 2CK1; 2CMT; 2CPL; 2CYH; 2ESL; 2GW2; 2HE9; 2HQ6; 2IGV; 2IGW; 2K7N; 2NUL; 2OJU; 2OK3; 2R99; 2RMA; 2RMB; 2RMC; 2RS4; 2WFJ; 2WLW; 2X25; 2X2A; 2X2C; 2X2D; 2X7K; 2XGY; 2Z6W; 3CYH; 3CYS; 3ICH; 3ICI; 3K0M; 3K0N; 3K0O; 3K0P; 3K0Q; 3K2C; 3ODI; 3ODL; 3QYU; 3R49; 3R4G; 3R54; 3R56; 3R57; 3R59; 3RCF; 3RCG; 3RCI; 3RCK; 3RCL; 3RD9; 3RDA; 3RDB; 3RDC; 3RDD; 4CYH; 4DGA; 4DGB; 4DGC; 4DGD; 4DGE; 4I9Y; 5CYH;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission


If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or