Entry: PS00180

General information about the entry

Entry name [info] GLNA_1
Accession [info] PS00180
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED; 01-NOV-1995 DATA UPDATE; 12-APR-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00162

Name and characterization of the entry

Description [info] Glutamine synthetase signature 1.
Pattern [info]
[FYWL]-D-G-S-S-x(6,8)-[DENQSTAK]-[SA]-[DE]-x(2)-[LIVMFY].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_04 which contains 554'241 sequence entries.


Total number of hits 163 in 163 different sequences
Number of true positive hits 152 in 152 different sequences
Number of 'unknown' hits 0
Number of false positive hits 11 in 11 different sequences
Number of false negative sequences 24
Number of 'partial' sequences 6
Precision (true positives / (true positives + false positives)) 93.25 %
Recall (true positives / (true positives + false negatives)) 86.36 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
152 sequences

3HAPM_CUPPJ (Q46ZL2    ), GLN11_ARATH (Q56WN1    ), GLN11_ORYSJ (P14656    ), 
GLN12_ARATH (Q8LCE1    ), GLN12_ORYSJ (P14654    ), GLN13_ARATH (Q9LVI8    ), 
GLN13_ORYSJ (Q4W8D0    ), GLN14_ARATH (Q9FMD9    ), GLN15_ARATH (Q8GXW5    ), 
GLN1A_BACCE (P19064    ), GLN1A_BACSU (P12425    ), GLN1A_CLOSA (P10656    ), 
GLN1A_HALSA (Q9HNI2    ), GLN1A_HALVD (P43386    ), GLN1A_LACDE (P45627    ), 
GLN1A_LACLA (Q9CDL9    ), GLN1A_METJA (Q60182    ), GLN1A_METMP (O59648    ), 
GLN1A_METTH (O27612    ), GLN1A_METVO (P21154    ), GLN1A_PYRAB (Q9UY99    ), 
GLN1A_PYRFU (Q05907    ), GLN1A_PYRHO (O58097    ), GLN1A_PYRWO (P36687    ), 
GLN1A_STAAC (Q5HGC3    ), GLN1A_STAAM (P60890    ), GLN1A_STAAN (P99095    ), 
GLN1A_STAAR (Q6GHC6    ), GLN1A_STAAS (Q6G9Q4    ), GLN1A_STAAU (P0A040    ), 
GLN1A_STAAW (P0A039    ), GLN1A_STAEQ (Q5HPN2    ), GLN1A_STAES (Q8CSR8    ), 
GLN1A_SULAC (Q9HH09    ), GLN1A_THEKO (O08467    ), GLN1A_THEMA (P36205    ), 
GLN1B_ACIFR (P07804    ), GLN1B_AZOBR (P10583    ), GLN1B_AZOC5 (P94126    ), 
GLN1B_AZOVI (P22248    ), GLN1B_BRADU (P05457    ), GLN1B_ECO57 (P0A9C7    ), 
GLN1B_ECOL6 (P0A9C6    ), GLN1B_ECOLI (P0A9C5    ), GLN1B_FRAAL (P46033    ), 
GLN1B_HAEIN (P43794    ), GLN1B_METCA (P15124    ), GLN1B_MICDP (P33035    ), 
GLN1B_MYCBO (P0A591    ), GLN1B_MYCS2 (A0R079    ), GLN1B_MYCTO (P9WN38    ), 
GLN1B_MYCTU (P9WN39    ), GLN1B_NEIGO (P25821    ), GLN1B_NOSS1 (P00964    ), 
GLN1B_PASMU (Q9CLP2    ), GLN1B_PROHU (P28786    ), GLN1B_PSEAE (Q9HU65    ), 
GLN1B_PSETA (Q3V5W6    ), GLN1B_RHIME (Q59747    ), GLN1B_RHOCA (P13499    ), 
GLN1B_RHOSH (P43518    ), GLN1B_SALTI (P0A1P7    ), GLN1B_SALTY (P0A1P6    ), 
GLN1B_SHIFL (P0A9C8    ), GLN1B_STRCO (P15106    ), GLN1B_STRFL (P77958    ), 
GLN1B_STRVR (Q05542    ), GLN1B_SYNP2 (P28605    ), GLN1B_SYNY3 (P77961    ), 
GLN1B_VIBAL (P19904    ), GLN1B_VIBCH (Q9KNJ2    ), GLNA1_ALNGL (O04867    ), 
GLNA1_CHLRE (Q42688    ), GLNA1_DAUCA (O22504    ), GLNA1_DROME (P20477    ), 
GLNA1_LOTJA (Q42899    ), GLNA1_MAIZE (P38559    ), GLNA1_MEDSA (P04078    ), 
GLNA1_PEA   (P08282    ), GLNA1_PHAVU (P04770    ), GLNA1_SOYBN (P24099    ), 
GLNA1_VITVI (P51118    ), GLNA2_ARATH (Q43127    ), GLNA2_BRADU (P04772    ), 
GLNA2_CHLRE (Q42689    ), GLNA2_DAUCA (O22506    ), GLNA2_DROME (P20478    ), 
GLNA2_FRAAL (P20805    ), GLNA2_HORVU (P13564    ), GLNA2_MAIZE (P38560    ), 
GLNA2_MEDSA (Q9XQ94    ), GLNA2_ORYSJ (P14655    ), GLNA2_PEA   (P08281    ), 
GLNA2_PHAVU (P04771    ), GLNA2_RHILP (Q02154    ), GLNA2_RHIML (P45626    ), 
GLNA2_SOYBN (O82560    ), GLNA2_STRHY (P22878    ), GLNA2_STRVR (P19432    ), 
GLNA2_VITVI (P51119    ), GLNA3_HORVU (Q06378    ), GLNA3_LUPAN (P14636    ), 
GLNA3_MAIZE (P38561    ), GLNA3_MEDSA (Q43785    ), GLNA3_PEA   (P07694    ), 
GLNA3_PHAVU (P00965    ), GLNA4_MAIZE (P38562    ), GLNA4_PEA   (Q43066    ), 
GLNA4_PHAVU (P15102    ), GLNA5_MAIZE (P38563    ), GLNAC_BRANA (Q42624    ), 
GLNAC_MAIZE (P25462    ), GLNA_ACOCA  (Q9QY94    ), GLNA_AGABI  (O00088    ), 
GLNA_AMAMU  (Q8X169    ), GLNA_ASHGO  (Q75BT9    ), GLNA_BOVIN  (P15103    ), 
GLNA_CAEEL  (P34497    ), GLNA_CANGA  (Q6FMT6    ), GLNA_CANLF  (Q8HZM5    ), 
GLNA_CHICK  (P16580    ), GLNA_COLGL  (Q12613    ), GLNA_CRIGR  (P04773    ), 
GLNA_CRYNB  (P0CN85    ), GLNA_CRYNJ  (P0CN84    ), GLNA_DEBHA  (Q6B4U7    ), 
GLNA_EMENI  (Q96V52    ), GLNA_FUSSH  (Q9UUN6    ), GLNA_GIBFU  (Q9C2U9    ), 
GLNA_HEBCY  (Q96UV5    ), GLNA_HUMAN  (P15104    ), GLNA_KLULA  (Q874T6    ), 
GLNA_LACSA  (P23712    ), GLNA_LUPLU  (P52782    ), GLNA_MACFA  (Q4R7U3    ), 
GLNA_MIMIV  (Q5UR44    ), GLNA_MOUSE  (P15105    ), GLNA_NEUCR  (Q86ZF9    ), 
GLNA_NICPL  (P12424    ), GLNA_PANAR  (Q04831    ), GLNA_PIG    (P46410    ), 
GLNA_PINSY  (P52783    ), GLNA_RAT    (P09606    ), GLNA_SCHPO  (Q09179    ), 
GLNA_SQUAC  (P41320    ), GLNA_SUIBO  (Q8J1R3    ), GLNA_SULSO  (P23794    ), 
GLNA_TUBBO  (Q86ZU6    ), GLNA_VIGAC  (P32289    ), GLNA_XENLA  (P51121    ), 
GLNA_YARLI  (Q6C3E0    ), GLNA_YEAST  (P32288    )
» more

UniProtKB/Swiss-Prot
False negative sequences
24 sequences

GLN1A_ARCFU (O29313    ), GLN1A_MYCBO (P64246    ), GLN1A_MYCS2 (A0R083    ), 
GLN1A_MYCTO (P9WN36    ), GLN1A_MYCTU (P9WN37    ), GLN1B_AQUAE (O66514    ), 
GLN1B_HELPJ (Q9ZLW5    ), GLN1B_HELPY (P94845    ), GLN1B_RHILV (P09826    ), 
GLNA1_DICDI (Q86B00    ), GLNA2_DICDI (P0C7B6    ), GLNA3_BACFR (P15623    ), 
GLNA3_BUTFI (Q05650    ), GLNA3_DICDI (Q54WR9    ), GLNA3_RHILP (P31592    ), 
GLNA3_RHIME (O87393    ), GMAS_METMY  (A9ZPH9    ), GMAS_METUF  (F5RH07    ), 
LGSN_CANLF  (Q1ZZS1    ), LGSN_HUMAN  (Q5TDP6    ), LGSN_MOUSE  (Q8CIX8    ), 
LGSN_RABIT  (Q0GA40    ), LGSN_RAT    (Q7TT51    ), PUUA_ECOLI  (P78061    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
6 sequences

GLN1B_PHOLP (P20479    ), GLN1B_TRITH (P51120    ), GLNA2_EMIHU (P81643    ), 
GLNA2_PINPS (P81107    ), GLNA_DUNSA  (P11600    ), GLNA_VITSX  (P85087    )
» more

UniProtKB/Swiss-Prot
False positive sequences
11 sequences

BGBP2_MANSE (Q8ISB6    ), COR2A_BOVIN (Q32LP9    ), COR2A_HUMAN (Q92828    ), 
COR2A_MOUSE (Q8C0P5    ), EAE_ECO11   (O31000    ), EAE_ECO27   (P19809    ), 
EAE_ECO57   (P43261    ), SPZ2A_WHEAT (Q9ST57    ), SPZ2B_WHEAT (P93692    ), 
TRM82_ASPFC (B0XNT4    ), TRM82_ASPFU (Q4WJR4    )
» more

PDB
[Detailed view]
26 PDB

1F1H; 1F52; 1FPY; 1HTO; 1HTQ; 2BVC; 2D3A; 2D3B; 2D3C; 2GLS; 2OJW; 2QC8; 2UU7; 2WHI; 3FKY; 3NG0; 3ZXR; 3ZXV; 4ACF; 4LNF; 4LNI; 4LNK; 4LNN; 4LNO; 4S0R; 5LDF
» more

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