PROSITE entry PS00180
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission
General information about the entry
| Entry name [info] | GLNA_1 |
| Accession [info] | PS00180 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-NOV-1995 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00162 |
Name and characterization of the entry
| Description [info] | Glutamine synthetase signature 1. |
| Pattern [info] |
[FYWL]-D-G-S-S-x(6,8)-[DENQSTAK]-[SA]-[DE]-x(2)-[LIVMFY]. |
Numerical results [info]
| Total number of hits | 167 in 167 different sequences |
| Number of true positive hits | 155 in 155 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 12 in 12 different sequences |
| Number of false negative sequences | 28 |
| Number of 'partial' sequences | 6 |
| Precision (true positives / (true positives + false positives)) | 92.81 % |
| Recall (true positives / (true positives + false negatives)) | 84.70 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
155 sequences
3HAPM_CUPPJ (Q46ZL2), GLN11_ARATH (Q56WN1), GLN11_ORYSJ (P14656), GLN12_ARATH (Q8LCE1), GLN12_ORYSJ (P14654), GLN13_ARATH (Q9LVI8), GLN13_ORYSJ (Q4W8D0), GLN14_ARATH (Q9FMD9), GLN15_ARATH (Q8GXW5), GLN1A_BACCE (P19064), GLN1A_BACSU (P12425), GLN1A_CLOSA (P10656), GLN1A_LACDE (P45627), GLN1A_LACLA (Q9CDL9), GLN1A_STAAC (Q5HGC3), GLN1A_STAAM (P60890), GLN1A_STAAN (P99095), GLN1A_STAAR (Q6GHC6), GLN1A_STAAS (Q6G9Q4), GLN1A_STAAU (P0A040), GLN1A_STAAW (P0A039), GLN1A_STAEQ (Q5HPN2), GLN1A_STAES (Q8CSR8), GLN1A_THEMA (P36205), GLN1B_ACIFR (P07804), GLN1B_AZOBR (P10583), GLN1B_AZOC5 (P94126), GLN1B_AZOVI (P22248), GLN1B_BRADU (P05457), GLN1B_CERSP (P43518), GLN1B_ECO57 (P0A9C7), GLN1B_ECOL6 (P0A9C6), GLN1B_ECOLI (P0A9C5), GLN1B_FRAAL (P46033), GLN1B_HAEIN (P43794), GLN1B_METCA (P15124), GLN1B_MICDP (P33035), GLN1B_MYCBO (P0A591), GLN1B_MYCS2 (A0R079), GLN1B_MYCTO (P9WN38), GLN1B_MYCTU (P9WN39), GLN1B_NEIGO (P25821), GLN1B_NOSS1 (P00964), GLN1B_PASMU (Q9CLP2), GLN1B_PICP2 (P28605), GLN1B_PROHU (P28786), GLN1B_PSEAE (Q9HU65), GLN1B_PSETA (Q3V5W6), GLN1B_RHIME (Q59747), GLN1B_RHOCA (P13499), GLN1B_SALTI (P0A1P7), GLN1B_SALTY (P0A1P6), GLN1B_SHIFL (P0A9C8), GLN1B_STRCO (P15106), GLN1B_STRFL (P77958), GLN1B_STRVR (Q05542), GLN1B_SYNY3 (P77961), GLN1B_VIBAL (P19904), GLN1B_VIBCH (Q9KNJ2), GLNA1_ALNGL (O04867), GLNA1_CHLRE (Q42688), GLNA1_DAUCA (O22504), GLNA1_DROME (P20477), GLNA1_LOTJA (Q42899), GLNA1_MAIZE (P38559), GLNA1_MEDSA (P04078), GLNA1_METMA (Q8PY99), GLNA1_PEA (P08282), GLNA1_PHAVU (P04770), GLNA1_SOYBN (P24099), GLNA1_VITVI (P51118), GLNA2_ARATH (Q43127), GLNA2_BRADU (P04772), GLNA2_CHLRE (Q42689), GLNA2_DAUCA (O22506), GLNA2_DROME (P20478), GLNA2_FRAAL (P20805), GLNA2_HORVU (P13564), GLNA2_MAIZE (P38560), GLNA2_MEDSA (Q9XQ94), GLNA2_ORYSJ (P14655), GLNA2_PEA (P08281), GLNA2_PHAVU (P04771), GLNA2_RHILP (Q02154), GLNA2_RHIML (P45626), GLNA2_SOYBN (O82560), GLNA2_STRHY (P22878), GLNA2_STRVR (P19432), GLNA2_VITVI (P51119), GLNA3_HALMT (I3R176), GLNA3_HORVU (Q06378), GLNA3_LUPAN (P14636), GLNA3_MAIZE (P38561), GLNA3_MEDSA (Q43785), GLNA3_PEA (P07694), GLNA3_PHAVU (P00965), GLNA4_MAIZE (P38562), GLNA4_PEA (Q43066), GLNA4_PHAVU (P15102), GLNA5_MAIZE (P38563), GLNAC_BRANA (Q42624), GLNAC_MAIZE (P25462), GLNA_ACOCA (Q9QY94), GLNA_AGABI (O00088), GLNA_AMAMU (Q8X169), GLNA_BOVIN (P15103), GLNA_CAEEL (P34497), GLNA_CANGA (Q6FMT6), GLNA_CANLF (Q8HZM5), GLNA_CHICK (P16580), GLNA_COLGL (Q12613), GLNA_CRIGR (P04773), GLNA_CRYNB (P0CN85), GLNA_CRYNJ (P0CN84), GLNA_DEBHA (Q6B4U7), GLNA_EMENI (Q96V52), GLNA_EREGS (Q75BT9), GLNA_FUSSH (Q9UUN6), GLNA_GIBFU (Q9C2U9), GLNA_HALSA (Q9HNI2), GLNA_HALVD (P43386), GLNA_HEBCY (Q96UV5), GLNA_HUMAN (P15104), GLNA_KLULA (Q874T6), GLNA_LACSA (P23712), GLNA_LUPLU (P52782), GLNA_MACFA (Q4R7U3), GLNA_METJA (Q60182), GLNA_METMP (O59648), GLNA_METTH (O27612), GLNA_METVO (P21154), GLNA_MIMIV (Q5UR44), GLNA_MOUSE (P15105), GLNA_NEUCR (Q86ZF9), GLNA_NICPL (P12424), GLNA_PANAR (Q04831), GLNA_PIG(P46410), GLNA_PINSY (P52783), GLNA_PYRAB (Q9UY99), GLNA_PYRFU (Q05907), GLNA_PYRHO (O58097), GLNA_PYRWO (P36687), GLNA_RAT(P09606), GLNA_SACS2 (P23794), GLNA_SCHPO (Q09179), GLNA_SQUAC (P41320), GLNA_SUIBO (Q8J1R3), GLNA_SULAC (Q9HH09), GLNA_THEKO (O08467), GLNA_THET8 (Q5SIP0), GLNA_TUBBO (Q86ZU6), GLNA_VIGAC (P32289), GLNA_XENLA (P51121), GLNA_YARLI (Q6C3E0), GLNA_YEAST (P32288)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
28 sequences
GLN1A_MYCBO (P64246), GLN1A_MYCS2 (A0R083), GLN1A_MYCTO (P9WN36), GLN1A_MYCTU (P9WN37), GLN1B_AQUAE (O66514), GLN1B_HELPJ (Q9ZLW5), GLN1B_HELPY (P94845), GLN1B_RHILV (P09826), GLNA1_DICDI (Q86B00), GLNA2_DICDI (P0C7B6), GLNA2_HALMT (I3R584), GLNA2_STRCO (Q9RDS6), GLNA3_BACFR (P15623), GLNA3_BUTFI (Q05650), GLNA3_DICDI (Q54WR9), GLNA3_RHILP (P31592), GLNA3_RHIME (O87393), GLNA3_STRCO (Q9KZC7), GLNA4_STRCO (O88070), GLNA_ARCFU (O29313), GMAS_METMY (A9ZPH9), GMAS_METUF (F5RH07), LGSN_CANLF (Q1ZZS1), LGSN_HUMAN (Q5TDP6), LGSN_MOUSE (Q8CIX8), LGSN_RABIT (Q0GA40), LGSN_RAT(Q7TT51), PUUA_ECOLI (P78061)» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
6 sequences
GLN1B_PHOLP (P20479), GLN1B_TRITH (P51120), GLNA2_EMIHU (P81643), GLNA2_PINPS (P81107), GLNA_DUNSA (P11600), GLNA_VITSX (P85087)» more |
| UniProtKB/Swiss-Prot False positive sequences |
12 sequences
BGBP2_MANSE (Q8ISB6), COR2A_BOVIN (Q32LP9), COR2A_HUMAN (Q92828), COR2A_MOUSE (Q8C0P5), EAE_ECO11 (O31000), EAE_ECO27 (P19809), EAE_ECO57 (P43261), GLYAR_HALSA (Q9HHR2), SPZ2A_WHEAT (Q9ST57), SPZ2B_WHEAT (P93692), TRM82_ASPFC (B0XNT4), TRM82_ASPFU (Q4WJR4)» more |
| PDB [Detailed view] |
41 PDB
1F1H; 1F52; 1FPY; 1HTO; 1HTQ; 1LGR; 2BVC; 2D3A; 2D3B; 2D3C; 2GLS; 2LGS; 2OJW; 2QC8; 2UU7; 2WGS; 2WHI; 3FKY; 3NG0; 3ZXR; 3ZXV; 4ACF; 4LNF; 4LNI; 4LNK; 4LNN; 4LNO; 4S0R; 4XYC; 5LDF; 7CPR; 7EVT; 7U5N; 7W85; 8DNU; 8ECY; 8TFB; 8TFC; 8TFK; 8TGE; 8UFJ » more |