Entry: PS00196

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General information about the entry

Entry name [info] COPPER_BLUE
Accession [info] PS00196
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); JAN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00174

Name and characterization of the entry

Description [info] Type-1 copper (blue) proteins signature.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_03 which contains 547'964 sequence entries.

Total number of hits 161 in 161 different sequences
Number of true positive hits 89 in 89 different sequences
Number of 'unknown' hits
Number of false positive hits 72 in 72 different sequences
Number of false negative sequences 9
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 55.28 %
Recall (true positives / (true positives + false negatives)) 90.82 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] copper at position 7
Site [info] copper at position 11
Version [info] 1

Cross-references [info]

True positive sequences
89 sequences

AMCY_METEA  (P04172), AMCY_PARDE  (P22364), AMCY_PARVE  (P22365), 
AURA_CHLAA  (Q8RMH6), AURB_CHLAA  (P27197), AZUP_ACHCY  (P19567), 
AZUP_ALCFA  (P04377), AZUP_METEA  (P04171), AZUP_PARDE  (P80649), 
AZUP_PARPN  (P80401), AZUR1_ALCXX (P56547), AZUR1_METJ  (P12334), 
AZUR2_ALCXX (P56275), AZUR2_METJ  (P12335), AZUR_ACHDE  (P00280), 
AZUR_ALCFA  (P00281), AZUR_ALCSP  (P00279), AZUR_BORBR  (P0A321), 
AZUR_BORPA  (P0A322), AZUR_BORPE  (P0A320), AZUR_PSEAE  (P00282), 
AZUR_PSECL  (P00286), AZUR_PSEDE  (P00283), AZUR_PSEFA  (P80546), 
AZUR_PSEFB  (P00284), AZUR_PSEFC  (P00285), AZUR_PSEPU  (P34097), 
BABL_CUCSA  (P00303), BCB1_ARATH  (Q07488), BCP_PEA     (Q41001), 
CPC_CUCSA   (P29602), H81_NEIGO   (P07211), H8_NEIMA    (P57025), 
H8_NEIMB    (P57026), H8_NEIMF    (P07212), HCY_NATPH   (P39442), 
MAVI_CUCPE  (P80728), PLAS1_ARATH (P11490), PLAS1_POPNI (P00299), 
PLAS1_TOBAC (P35476), PLAS2_ARATH (P42699), PLAS2_POPNI (P11970), 
PLAS2_TOBAC (P35477), PLAS_ACUOB  (P26956), PLAS_ANAVA  (P0C178), 
PLAS_ANAVT  (Q3M9H8), PLAS_CAPBU  (P00294), PLAS_CHLRE  (P18068), 
PLAS_CUCPE  (P00292), PLAS_CUCSA  (P00293), PLAS_CYAP7  (B7KAE8), 
PLAS_DAUCA  (P20422), PLAS_DRYCA  (Q7SIB8), PLAS_GINBI  (P84338), 
PLAS_HORVU  (P08248), PLAS_LACSA  (P00290), PLAS_MERPE  (P00295), 
PLAS_NOSP7  (B2IVD7), PLAS_NOSS1  (P46444), PLAS_NOSSO  (O52830), 
PLAS_ORYSI  (A2Y886), PLAS_ORYSJ  (Q0DFC9), PLAS_PEA    (P16002), 
PLAS_PETCR  (P17341), PLAS_PHAVU  (P00287), PLAS_PHOLA  (Q51883), 
PLAS_PHYPA  (Q9SXW9), PLAS_PROHO  (P50057), PLAS_RUMOB  (P00298), 
PLAS_SAMNI  (P00291), PLAS_SCEFU  (P00300), PLAS_SILPR  (P07030), 
PLAS_SOLCR  (P00297), PLAS_SOLLC  (P17340), PLAS_SOLTU  (P00296), 
PLAS_SPIOL  (P00289), PLAS_SYNE7  (P55020), PLAS_SYNJB  (Q2JHE1), 
PLAS_SYNP6  (Q5N4W8), PLAS_SYNY3  (P21697), PLAS_ULVAR  (P13133), 
PLAS_ULVPE  (P56274), PLAS_ULVPR  (P07465), PLAS_VICFA  (P00288), 
RUS1_ACIFR  (P23742), RUS2_ACIFR  (P0C918), RUS_ACIF2   (B7JAQ0), 
STEL_TOXVR  (P00302), UMEC_ARMRU  (P42849)
» More

False negative sequences
9 sequences

AZUP_RHILV  (Q52825), AZUR_METFK  (Q50400), BABL_ARATH  (Q8LG89), 
BABL_LILLO  (P60496), BCB2_ARATH  (O80517), BCB3_ARATH  (Q96316), 
MPAA3_AMBEL (P00304), NO552_SOYBN (Q02917), PLAS_FRIAG  (O22646)
» More

'Partial' sequences
2 sequences

PLAS_MICAE  (P10625), PLAS_THAOC  (P84800)

False positive sequences
72 sequences

CCD14_HUMAN (Q49A88), CD59_PAPSP  (Q28785), CEPL_CERFI  (P81702), 
DEN_HCMVA   (P16785), DEN_HCMVM   (Q6SW84), DEN_HCMVT   (D5LX59), 
DIG1_CAEEL  (Q09165), DYH3_MOUSE  (Q8BW94), EF121_ARATH (Q9FGC9), 
EPHA3_DANRE (O13146), ERG7_MOUSE  (Q8BLN5), ERG7_RAT    (P48450), 
F215A_HUMAN (Q9Y5M1), FGFH_NPVOP  (O10284), GLGB_MAIZE  (Q08047), 
GPR33_HUMAN (Q49SQ1), GPR33_PANPA (Q49SQ2), GPR33_PANTR (Q49SQ3), 
LYST_HUMAN  (Q99698), LYSX_MYCA1  (A0QHC4), LYSX_MYCPA  (Q740J9), 
MUC2_MOUSE  (Q80Z19), NR1H3_BOVIN (Q5E9B6), NR1H3_HUMAN (Q13133), 
NR1H3_MOUSE (Q9Z0Y9), NR1H3_RAT   (Q62685), NTR2_MOUSE  (P70310), 
NTR2_RAT    (Q63384), QUEF_NOVAD  (Q2G586), RL36_THET2  (Q72I28), 
RL36_THET8  (Q5SHR2), RL36_THETH  (P80256), RL36_TROW8  (Q83I57), 
RL36_TROWT  (Q83G08), S35B2_HUMAN (Q8TB61), S35B2_PONAB (Q5R9A1), 
SORL_CHICK  (Q98930), SORL_HUMAN  (Q92673), SORL_MOUSE  (O88307), 
SORL_RABIT  (Q95209), STA5A_MOUSE (P42230), SYI_PHOPR   (Q6LUL1), 
THIC_RHOPB  (Q216H0), TOP3_STAA3  (Q2FEN5), TOP3_STAA8  (Q2FW03), 
TOP3_STAAB  (P0C2W6), TOP3_STAAC  (Q5HDV4), TOP3_STAAM  (Q99S17), 
TOP3_STAAN  (Q7A455), TOP3_STAAR  (Q6GEH9), TOP3_STAAS  (Q6G767), 
VPS54_CAEEL (Q22639), XKR8_MOUSE  (Q8C0T0), Y1189_PHOPR (Q6LSX6), 
Y2934_KINRD (A6WC59), Y6211_BACAN (Q9X397), YBKF_SCHPO  (Q9URU4)
» More

[Detailed view]
201 PDB

1A3Z; 1A4A; 1A4B; 1A4C; 1A8Z; 1AAC; 1AAJ; 1AAN; 1ADW; 1AG6; 1AIZ; 1AZB; 1AZC; 1AZN; 1AZR; 1AZU; 1B3I; 1BAW; 1BEX; 1BQK; 1BQR; 1BXA; 1BXU; 1BXV; 1BYO; 1BYP; 1CUO; 1CUR; 1DYZ; 1DZ0; 1E30; 1E5Y; 1E5Z; 1E65; 1E67; 1EZL; 1FA4; 1GR7; 1GY1; 1I53; 1ID2; 1ILS; 1IUZ; 1J5C; 1J5D; 1JER; 1JOI; 1JVL; 1JVO; 1JXD; 1JXF; 1JXG; 1JZE; 1JZF; 1JZG; 1JZH; 1JZI; 1JZJ; 1KDI; 1KDJ; 1M9W; 1MDA; 1MG2; 1MG3; 1NIN; 1NWO; 1NWP; 1NZR; 1OOW; 1OV8; 1PAZ; 1PCS; 1PLA; 1PLB; 1PLC; 1PMY; 1PNC; 1PND; 1PY0; 1PZA; 1PZB; 1PZC; 1QHQ; 1RCY; 1RKR; 1T5K; 1TEF; 1TEG; 1TKW; 1TU2; 1UAT; 1URI; 1VLX; 1WS7; 1WS8; 1X9R; 1X9U; 1XB3; 1XB6; 1XB8; 1YLB; 1ZIA; 1ZIB; 2AAN; 2AZA; 2AZU; 2B3I; 2BZ7; 2BZC; 2CAK; 2CBP; 2CCW; 2CJ3; 2FNW; 2FTA; 2GB2; 2GBA; 2GC4; 2GC7; 2GHZ; 2GI0; 2GIM; 2H3X; 2H47; 2HX7; 2HX8; 2HXA; 2I7O; 2I7S; 2IAA; 2IDF; 2IDT; 2IDU; 2J55; 2J56; 2J57; 2JKW; 2JXM; 2MTA; 2OJ1; 2OV0; 2P80; 2PCF; 2PCY; 2PLT; 2Q5B; 2QDV; 2QDW; 2RAC; 2UX6; 2UX7; 2UXF; 2UXG; 2W88; 2W8C; 3AZU; 3BQV; 3C75; 3CVB; 3CVC; 3CVD; 3ERX; 3IBO; 3IN0; 3JTB; 3L45; 3NYK; 3PAZ; 3PCY; 3PLY; 3UGE; 4AZU; 4BWT; 4BWU; 4BWW; 4BXV; 4DP0; 4DP1; 4DP2; 4DP4; 4DP5; 4DP6; 4DP7; 4DP8; 4DP9; 4DPA; 4DPB; 4DPC; 4HZ1; 4JKN; 4KO7; 4KOB; 4P5R; 4P5S; 4PCY; 5AZU; 5PCY; 6PCY; 7PCY; 8PAZ; 9PCY
» More

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