Entry: PS00196

Forthcoming changes to the profile format
General information about the entry

Entry name [info] COPPER_BLUE
Accession [info] PS00196
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); SEP-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00174

Name and characterization of the entry

Description [info] Type-1 copper (blue) proteins signature.
Pattern [info]
[GA]-x(0,2)-[YSA]-x(0,1)-[VFY]-{SEDT}-C-x(1,2)-[PG]-x(0,1)-H-x(2,4)-[MQ].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_10 which contains 546'790 sequence entries.


Total number of hits 161 in 161 different sequences
Number of true positive hits 89 in 89 different sequences
Number of 'unknown' hits
Number of false positive hits 72 in 72 different sequences
Number of false negative sequences 9
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 55.28 %
Recall (true positives / (true positives + false negatives)) 90.82 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] copper at position 7
Site [info] copper at position 11
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
89 sequences

AMCY_METEA  (P04172), AMCY_PARDE  (P22364), AMCY_PARVE  (P22365), 
AURA_CHLAA  (Q8RMH6), AURB_CHLAA  (P27197), AZUP_ACHCY  (P19567), 
AZUP_ALCFA  (P04377), AZUP_METEA  (P04171), AZUP_PARDE  (P80649), 
AZUP_PARPN  (P80401), AZUR1_ALCXX (P56547), AZUR1_METJ  (P12334), 
AZUR2_ALCXX (P56275), AZUR2_METJ  (P12335), AZUR_ACHDE  (P00280), 
AZUR_ALCFA  (P00281), AZUR_ALCSP  (P00279), AZUR_BORBR  (P0A321), 
AZUR_BORPA  (P0A322), AZUR_BORPE  (P0A320), AZUR_PSEAE  (P00282), 
AZUR_PSECL  (P00286), AZUR_PSEDE  (P00283), AZUR_PSEFA  (P80546), 
AZUR_PSEFB  (P00284), AZUR_PSEFC  (P00285), AZUR_PSEPU  (P34097), 
BABL_CUCSA  (P00303), BCB1_ARATH  (Q07488), BCP_PEA     (Q41001), 
CPC_CUCSA   (P29602), H81_NEIGO   (P07211), H8_NEIMA    (P57025), 
H8_NEIMB    (P57026), H8_NEIMF    (P07212), HCY_NATPH   (P39442), 
MAVI_CUCPE  (P80728), PLAS1_ARATH (P11490), PLAS1_POPNI (P00299), 
PLAS1_TOBAC (P35476), PLAS2_ARATH (P42699), PLAS2_POPNI (P11970), 
PLAS2_TOBAC (P35477), PLAS_ACUOB  (P26956), PLAS_ANAVA  (P0C178), 
PLAS_ANAVT  (Q3M9H8), PLAS_CAPBU  (P00294), PLAS_CHLRE  (P18068), 
PLAS_CUCPE  (P00292), PLAS_CUCSA  (P00293), PLAS_CYAP7  (B7KAE8), 
PLAS_DAUCA  (P20422), PLAS_DRYCA  (Q7SIB8), PLAS_GINBI  (P84338), 
PLAS_HORVU  (P08248), PLAS_LACSA  (P00290), PLAS_MERPE  (P00295), 
PLAS_NOSP7  (B2IVD7), PLAS_NOSS1  (P46444), PLAS_NOSSO  (O52830), 
PLAS_ORYSI  (A2Y886), PLAS_ORYSJ  (Q0DFC9), PLAS_PEA    (P16002), 
PLAS_PETCR  (P17341), PLAS_PHAVU  (P00287), PLAS_PHOLA  (Q51883), 
PLAS_PHYPA  (Q9SXW9), PLAS_PROHO  (P50057), PLAS_RUMOB  (P00298), 
PLAS_SAMNI  (P00291), PLAS_SCEFU  (P00300), PLAS_SILPR  (P07030), 
PLAS_SOLCR  (P00297), PLAS_SOLLC  (P17340), PLAS_SOLTU  (P00296), 
PLAS_SPIOL  (P00289), PLAS_SYNE7  (P55020), PLAS_SYNJB  (Q2JHE1), 
PLAS_SYNP6  (Q5N4W8), PLAS_SYNY3  (P21697), PLAS_ULVAR  (P13133), 
PLAS_ULVPE  (P56274), PLAS_ULVPR  (P07465), PLAS_VICFA  (P00288), 
RUS1_ACIFR  (P23742), RUS2_ACIFR  (P0C918), RUS_ACIF2   (B7JAQ0), 
STEL_TOXVR  (P00302), UMEC_ARMRU  (P42849)
» More

UniProtKB/Swiss-Prot
False negative sequences
9 sequences

AZUP_RHILV  (Q52825), AZUR_METFK  (Q50400), BABL_ARATH  (Q8LG89), 
BABL_LILLO  (P60496), BCB2_ARATH  (O80517), BCB3_ARATH  (Q96316), 
MPAA3_AMBEL (P00304), NO552_SOYBN (Q02917), PLAS_FRIAG  (O22646)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

PLAS_MICAE  (P10625), PLAS_THAOC  (P84800)

		
UniProtKB/Swiss-Prot
False positive sequences
72 sequences

4FTAS_STRCT (B6VP39), APOH_BOVIN  (P17690), ARGD_RALSO  (Q8XWN8), 
CCD14_HUMAN (Q49A88), CD59_PAPSP  (Q28785), CEPL_CERFI  (P81702), 
DEN_HCMVA   (P16785), DEN_HCMVM   (Q6SW84), DEN_HCMVT   (D5LX59), 
DIG1_CAEEL  (Q09165), DYH3_MOUSE  (Q8BW94), EF121_ARATH (Q9FGC9), 
EPHA3_DANRE (O13146), ERG7_MOUSE  (Q8BLN5), ERG7_RAT    (P48450), 
F215A_HUMAN (Q9Y5M1), FGFH_NPVOP  (O10284), GLGB_MAIZE  (Q08047), 
GPR33_HUMAN (Q49SQ1), GPR33_PANPA (Q49SQ2), GPR33_PANTR (Q49SQ3), 
ILVC_STAHJ  (Q4L7T9), IOLC_PHOPR  (Q6LK43), LYST_BOVIN  (Q9TTK4), 
LYST_HUMAN  (Q99698), LYSX_MYCA1  (A0QHC4), LYSX_MYCPA  (Q740J9), 
MUC2_MOUSE  (Q80Z19), NR1H3_BOVIN (Q5E9B6), NR1H3_HUMAN (Q13133), 
NR1H3_MOUSE (Q9Z0Y9), NR1H3_RAT   (Q62685), NTR2_MOUSE  (P70310), 
NTR2_RAT    (Q63384), QUEF_NOVAD  (Q2G586), RL36_THET2  (Q72I28), 
RL36_THET8  (Q5SHR2), RL36_THETH  (P80256), RL36_TROW8  (Q83I57), 
RL36_TROWT  (Q83G08), S35B2_HUMAN (Q8TB61), S35B2_PONAB (Q5R9A1), 
SORL_CHICK  (Q98930), SORL_HUMAN  (Q92673), SORL_MOUSE  (O88307), 
SORL_RABIT  (Q95209), STA5A_MOUSE (P42230), SYI_PHOPR   (Q6LUL1), 
THIC_RHOPB  (Q216H0), TOP3_STAA3  (Q2FEN5), TOP3_STAA8  (Q2FW03), 
TOP3_STAAB  (P0C2W6), TOP3_STAAC  (Q5HDV4), TOP3_STAAM  (Q99S17), 
TOP3_STAAN  (Q7A455), TOP3_STAAR  (Q6GEH9), TOP3_STAAS  (Q6G767), 
TOP3_STAAW  (Q7A075), TOP3_STAEQ  (Q5HLZ4), TOP3_STAES  (Q8CRF7), 
TOP3_STAHJ  (Q4L8B8), TOP3_STAS1  (Q49ZH2), TRRAP_HUMAN (Q9Y4A5), 
TRRAP_MOUSE (Q80YV3), U507_LODEL  (A5DUP0), VPS54_CAEBR (Q61JT8), 
VPS54_CAEEL (Q22639), XKR8_MOUSE  (Q8C0T0), Y1189_PHOPR (Q6LSX6), 
Y2934_KINRD (A6WC59), Y6211_BACAN (Q9X397), YBKF_SCHPO  (Q9URU4)
» More

PDB
[Detailed view]
201 PDB

1A3Z; 1A4A; 1A4B; 1A4C; 1A8Z; 1AAC; 1AAJ; 1AAN; 1ADW; 1AG6; 1AIZ; 1AZB; 1AZC; 1AZN; 1AZR; 1AZU; 1B3I; 1BAW; 1BEX; 1BQK; 1BQR; 1BXA; 1BXU; 1BXV; 1BYO; 1BYP; 1CUO; 1CUR; 1DYZ; 1DZ0; 1E30; 1E5Y; 1E5Z; 1E65; 1E67; 1EZL; 1FA4; 1GR7; 1GY1; 1I53; 1ID2; 1ILS; 1IUZ; 1J5C; 1J5D; 1JER; 1JOI; 1JVL; 1JVO; 1JXD; 1JXF; 1JXG; 1JZE; 1JZF; 1JZG; 1JZH; 1JZI; 1JZJ; 1KDI; 1KDJ; 1M9W; 1MDA; 1MG2; 1MG3; 1NIN; 1NWO; 1NWP; 1NZR; 1OOW; 1OV8; 1PAZ; 1PCS; 1PLA; 1PLB; 1PLC; 1PMY; 1PNC; 1PND; 1PY0; 1PZA; 1PZB; 1PZC; 1QHQ; 1RCY; 1RKR; 1T5K; 1TEF; 1TEG; 1TKW; 1TU2; 1UAT; 1URI; 1VLX; 1WS7; 1WS8; 1X9R; 1X9U; 1XB3; 1XB6; 1XB8; 1YLB; 1ZIA; 1ZIB; 2AAN; 2AZA; 2AZU; 2B3I; 2BZ7; 2BZC; 2CAK; 2CBP; 2CCW; 2CJ3; 2FNW; 2FTA; 2GB2; 2GBA; 2GC4; 2GC7; 2GHZ; 2GI0; 2GIM; 2H3X; 2H47; 2HX7; 2HX8; 2HXA; 2I7O; 2I7S; 2IAA; 2IDF; 2IDT; 2IDU; 2J55; 2J56; 2J57; 2JKW; 2JXM; 2MTA; 2OJ1; 2OV0; 2P80; 2PCF; 2PCY; 2PLT; 2Q5B; 2QDV; 2QDW; 2RAC; 2UX6; 2UX7; 2UXF; 2UXG; 2W88; 2W8C; 3AZU; 3BQV; 3C75; 3CVB; 3CVC; 3CVD; 3ERX; 3IBO; 3IN0; 3JTB; 3L45; 3NYK; 3PAZ; 3PCY; 3PLY; 3UGE; 4AZU; 4BWT; 4BWU; 4BWW; 4BXV; 4DP0; 4DP1; 4DP2; 4DP4; 4DP5; 4DP6; 4DP7; 4DP8; 4DP9; 4DPA; 4DPB; 4DPC; 4HZ1; 4JKN; 4KO7; 4KOB; 4P5R; 4P5S; 4PCY; 5AZU; 5PCY; 6PCY; 7PCY; 8PAZ; 9PCY
» More

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission