Entry: PS00202

General information about the entry

Entry name [info] RUBREDOXIN
Accession [info] PS00202
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); OCT-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00179

Name and characterization of the entry

Description [info] Rubredoxin signature.
Pattern [info]
[LIVM]-x-{G}-{R}-W-x-C-P-x-C-[AGD].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_11 which contains 553'231 sequence entries.


Total number of hits 51 in 48 different sequences
Number of true positive hits 48 in 45 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 6
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 94.12 %
Recall (true positives / (true positives + false negatives)) 88.89 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 2
Site [info] iron at position 7
Site [info] iron at position 10
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
45 sequences

ATG35_KOMPG (C4QVX6    ), HRB_MOOTA   (Q9FDN6    ), HUPJ_RHOCA  (Q03009    ), 
RUBH_METTH  (Q50533    ), RUBL_BRADU  (P48344    ), RUBL_RHILV  (P28151    ), 
RUBR1_ALCBS (Q0VTA9    ), RUBR1_DESDA (P04170    ), RUBR1_PSEAE (Q9HTK7    ), 
RUBR1_PSEOL (P12692    ), RUBR1_PSEPU (Q9WWW4    ), RUBR2_ALCBS (Q0VKZ2    ), 
RUBR2_CHLTE (P58993    ), RUBR2_CLOPE (P14072    ), RUBR2_DESDA (Q93PP8    ), 
RUBR2_PSEAE (Q9HTK8    ), RUBR2_PSEOL (P00272    ), RUBR2_PSEPU (Q9WWW5    ), 
RUBR2_RHOER (Q9AE63    ), RUBR3_CHLTE (P58025    ), RUBR3_RHOER (P0A4E8    ), 
RUBR3_RHOSQ (P0A4E9    ), RUBR4_RHOER (P0A4F0    ), RUBR4_RHOSQ (P0A4F1    ), 
RUBR_ACIAD  (P42453    ), RUBR_AZOCH  (P48343    ), RUBR_AZOVI  (P30778    ), 
RUBR_BUTME  (P14071    ), RUBR_CHLTI  (P09947    ), RUBR_CLOAB  (Q9AL94    ), 
RUBR_CLOPA  (P00268    ), RUBR_CLOSD  (P23474    ), RUBR_CUPNH  (P31912    ), 
RUBR_DESGI  (P00270    ), RUBR_DESVH  (P00269    ), RUBR_DESVM  (P15412    ), 
RUBR_HELMO  (P56263    ), RUBR_MEGEL  (P00271    ), RUBR_METTH  (O26258    ), 
RUBR_PEPAS  (P00267    ), RUBR_PYRAB  (Q9V099    ), RUBR_PYRFU  (P24297    ), 
RUBR_SYNY3  (P73068    ), RUBR_THETC  (P19500    ), RUBR_TREPA  (O83956    )
» more

UniProtKB/Swiss-Prot
False negative sequences
6 sequences

RUBR1_CHLTE (P58992    ), RUBR1_CLOPE (Q8XMB2    ), RUBR1_METJA (Q58145    ), 
RUBR2_METJA (Q58150    ), RUBR_ANAVT  (Q9XBL8    ), RUBR_NOSS1  (Q9WWN1    )
» more

UniProtKB/Swiss-Prot
False positive sequences
3 sequences

DHX34_HUMAN (Q14147    ), DHX34_MOUSE (Q9DBV3    ), STX19_BOVIN (Q0VCI2    )

		
PDB
[Detailed view]
69 PDB

1B13; 1B2J; 1B2O; 1BFY; 1BQ8; 1BQ9; 1BRF; 1C09; 1CAA; 1CAD; 1E8J; 1FHH; 1FHM; 1IRN; 1IRO; 1IU5; 1IU6; 1R0F; 1R0G; 1R0H; 1R0I; 1R0J; 1RB9; 1RDG; 1RDV; 1RWD; 1S24; 1SMM; 1SMU; 1SMW; 1SPW; 1T9O; 1T9P; 1T9Q; 1VCX; 1YK4; 1YK5; 1ZRP; 2DSX; 2KKD; 2PVE; 2PVX; 2PYA; 2QL0; 2RDV; 2V3B; 3KYU; 3KYV; 3KYW; 3KYX; 3KYY; 3RYG; 3RZ6; 3RZT; 3SS2; 4AR3; 4AR4; 4AR5; 4AR6; 4K9F; 4MBS; 4RXN; 4XNW; 5AI2; 5AI3; 5RXN; 6RXN; 7RXN; 8RXN
» more

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