Entry: PS00205

General information about the entry
Entry name TRANSFERRIN_LIKE_1
Accession number PS00205
Entry type PATTERN
Date APR-1990 (CREATED); JUN-1994 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00182
Name and characterization of the entry
DescriptionTransferrin-like domain signature 1.
Pattern Y-x(0,1)-[VAS]-V-[IVAC]-[IVA]-[IVA]-[RKH]-[RKS]-[GDENSA].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 68 hits in 41 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 61 hits in 34 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 7 hits in 7 different sequences
  • Number of known missed hits: 2
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 89.71 %
  • Recall (true hits / (true hits + false negatives)): 96.83 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 2
  • `Interesting' site in the pattern: 1,iron
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
ICA_MOUSE   (Q9DBD0), ICA_PIG     (Q29545), TRFE1_SALSA (P80426), 
TRFE2_SALSA (P80429), TRFEA_XENLA (P20233), TRFEB_XENLA (Q6PGT3), 
TRFE_ANAPL  (P56410), TRFE_BOVIN  (Q29443), TRFE_CHICK  (P02789), 
TRFE_GADMO  (Q92079), TRFE_HORSE  (P27425), TRFE_HUMAN  (P02787), 
TRFE_MOUSE  (Q921I1), TRFE_ONCKI  (P79815), TRFE_ORYLA  (P79819), 
TRFE_PANTR  (A5A6I6), TRFE_PAROL  (O93429), TRFE_PIG    (P09571), 
TRFE_RABIT  (P19134), TRFE_RAT    (P12346), TRFE_XENTR  (Q501K5), 
TRFL_BOVIN  (P24627), TRFL_BUBBU  (O77698), TRFL_CAMDR  (Q9TUM0), 
TRFL_CAPHI  (Q29477), TRFL_HORSE  (O77811), TRFL_HUMAN  (P02788), 
TRFL_MOUSE  (P08071), TRFL_PIG    (P14632), TRFM_HUMAN  (P08582), 
TRFM_MOUSE  (Q9R0R1), TRFM_RABIT  (O97490), TRF_BLADI   (Q02942), 
TRF_MANSE   (P22297)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
MYP_STRPU   (P19615), TRF_SARPE   (Q26643)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
TRFE_DRONO  (P85895)
False positive hits (sequences which do not belong to the set under consideration):
BIOD_YEAST  (P53630), HYALP_CAVPO (P23613), MURB_BORBR  (Q7WGH4), 
MURB_BORPA  (Q7W509), MURB_BORPE  (Q9X6Y8), RSH6A_HUMAN (Q9H0K4), 
RSH6A_MOUSE (Q8CDR2)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1A8E; 1A8F; 1AIV; 1AOV; 1B0L; 1B1X; 1B3E; 1B7U; 1B7Z; 1BIY; 1BKA; 1BLF; 1BP5; 1BTJ; 1CB6; 1CE2; 1D3K; 1D4N; 1DOT; 1DSN; 1DTG; 1DTZ; 1EH3; 1F9B; 1FCK; 1FQE; 1FQF; 1GV8; 1GVC; 1H43; 1H44; 1H45; 1H76; 1HSE; 1I6B; 1I6Q; 1IEJ; 1IQ7; 1JNF; 1JQF; 1JW1; 1L5T; 1LCF; 1LCT; 1LFG; 1LFH; 1LFI; 1LGB; 1N04; 1N76; 1N7W; 1N7X; 1N84; 1NFT; 1NKX; 1NNT; 1OQG; 1OQH; 1OVB; 1OVT; 1QJM; 1RYO; 1RYX; 1SDX; 1SQY; 1SUV; 1TFA; 1VFD; 1VFE; 2ALU; 2AYS; 2B65; 2BJJ; 2D3I; 2DOJ; 2DP8; 2DQV; 2DS9; 2DSF; 2DVC; 2DWA; 2DWH; 2DWI; 2DWJ; 2DXR; 2DXY; 2DYX; 2E0S; 2E1S; 2FA7; 2G93; 2H4I; 2HAU; 2HAV; 2HCA; 2NUV; 2NWJ; 2O1L; 2O51; 2O7U; 2O84; 2OCU; 2P1S; 2PMS; 2PX1; 2Q8J; 2QJE; 2R71; 2R9J; 2ZMB; 3CFL; 3CI8; 3CR9; 3CRB; 3E9X; 3FGS; 3IAZ; 3IB0; 3IB1; 3IB2; 3K0V; 3KJ7; 3MC2; 3MJN; 3O97; 3QYT; 3RGY; 3S9L; 3S9M; 3S9N; 3SDF; 3SKP; 3TAJ; 3TOD; 3TTR; 3TUS; 3U72; 3U8Q; 3UGW; 3UK4; 3USD; 3V5A; 3V83; 3V89; 3V8X; 3VDF; 3VE1; 4DIG; 4DXU; 4FIM; 4FJP; 4FOR; 4G2Z; 4G77; 4G8H; 4GRK; 4H0W;

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