To improve security and privacy, we are moving our web pages and services from HTTP to HTTPS.
To give users of web services time to transition to HTTPS, we will support separate HTTP and HTTPS services until the end of 2017.
From January 2018 most HTTP traffic will be automatically redirected to HTTPS. [more...]
View this page in https
Entry: PS00214

General information about the entry

Entry name [info] FABP
Accession [info] PS00214
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED; 01-APR-2006 DATA UPDATE; 22-NOV-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00188

Name and characterization of the entry

Description [info] Cytosolic fatty-acid binding proteins signature.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_11 which contains 556'196 sequence entries.

Total number of hits 134 in 134 different sequences
Number of true positive hits 107 in 107 different sequences
Number of 'unknown' hits 0
Number of false positive hits 27 in 27 different sequences
Number of false negative sequences 14
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 79.85 %
Recall (true positives / (true positives + false negatives)) 88.43 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

True positive sequences
107 sequences

FA10A_DANRE (Q9I8L5    ), FAB1A_DANRE (Q1AMT3    ), FABH_ASCSU  (P55776    ), 
FABP1_AMBME (P81399    ), FABP1_CAEEL (Q20223    ), FABP1_ECHGR (Q02970    ), 
FABP1_MANSE (P31416    ), FABP2_AMBME (P81400    ), FABP2_CAEEL (Q20224    ), 
FABP2_ECHGR (Q9BMK3    ), FABP2_MANSE (P31417    ), FABP3_CAEEL (Q20222    ), 
FABP4_BOVIN (P48035    ), FABP4_CAEEL (Q23092    ), FABP4_CEREL (A6YLM6    ), 
FABP4_HUMAN (P15090    ), FABP4_ICTTR (Q99P60    ), FABP4_MOUSE (P04117    ), 
FABP4_PIG   (O97788    ), FABP4_RAT   (P70623    ), FABP5_BOVIN (P55052    ), 
FABP5_CAEEL (O01814    ), FABP5_HUMAN (Q01469    ), FABP5_MOUSE (Q05816    ), 
FABP5_RAT   (P55053    ), FABP6_CAEEL (O01812    ), FABP6_HUMAN (P51161    ), 
FABP6_MOUSE (P51162    ), FABP6_PIG   (P10289    ), FABP6_RABIT (P50119    ), 
FABP6_RAT   (P80020    ), FABP7_BOVIN (Q09139    ), FABP7_CAEEL (O02323    ), 
FABP7_CHICK (Q05423    ), FABP7_HUMAN (O15540    ), FABP7_MOUSE (P51880    ), 
FABP7_RAT   (P55051    ), FABP9_CAEEL (Q965W1    ), FABP9_HUMAN (Q0Z7S8    ), 
FABP9_MOUSE (O08716    ), FABP9_RAT   (P55054    ), FABPH_BOSMU (Q4TZH2    ), 
FABPH_BOVIN (P10790    ), FABPH_HUMAN (P05413    ), FABPH_ICTTR (Q99P61    ), 
FABPH_MOUSE (P11404    ), FABPH_MYOLU (Q865F7    ), FABPH_ONCMY (O13008    ), 
FABPH_PIG   (O02772    ), FABPH_RAT   (P07483    ), FABPI_BOVIN (Q56JX9    ), 
FABPI_HUMAN (P12104    ), FABPI_MOUSE (P55050    ), FABPI_PIG   (Q45KW7    ), 
FABPI_RAT   (P02693    ), FABPI_XENLA (Q91775    ), FABPL_ANOPU (Q90239    ), 
FABPL_BOVIN (P80425    ), FABPL_CHICK (P80226    ), FABPL_GINCI (P80049    ), 
FABPL_HUMAN (P07148    ), FABPL_LEPPA (P82289    ), FABPL_LITCT (P0C241    ), 
FABPL_MOUSE (P12710    ), FABPL_PIG   (P49924    ), FABPL_RAT   (P02692    ), 
FABPL_RHASA (P80856    ), FABPL_RHIAE (P83409    ), FABPM_LOCMI (P41509    ), 
FABPM_SCHGR (P41496    ), FABP_ACASI  (O76821    ), FABP_ANOGA  (Q17017    ), 
FABP_BLOTA  (Q17284    ), FABP_CLOSI  (Q8MUC1    ), FABP_LEPDS  (Q9U5P1    ), 
FABP_SCHJA  (O45035    ), FABP_SCHMA  (P29498    ), MYP2_BOVIN  (P02690    ), 
MYP2_HORSE  (P0C6G6    ), MYP2_HUMAN  (P02689    ), MYP2_MOUSE  (P24526    ), 
MYP2_PIG    (P86412    ), MYP2_RABIT  (P02691    ), RABP1_BOVIN (P62964    ), 
RABP1_CHICK (P40220    ), RABP1_HIPCM (Q6T499    ), RABP1_HUMAN (P29762    ), 
RABP1_MOUSE (P62965    ), RABP1_PELSI (Q5R2J5    ), RABP1_RAT   (P62966    ), 
RABP1_TAKRU (O42386    ), RABP2_BOVIN (Q5PXY7    ), RABP2_CHICK (P30370    ), 
RABP2_HUMAN (P29373    ), RABP2_MOUSE (P22935    ), RABP2_RAT   (P51673    ), 
RABP2_XENLA (P50568    ), RET1_BOVIN  (P02694    ), RET1_HUMAN  (P09455    ), 
RET1_MOUSE  (Q00915    ), RET1_RAT    (P02696    ), RET2_HUMAN  (P50120    ), 
RET2_MOUSE  (Q08652    ), RET2_PIG    (P50121    ), RET2_RAT    (P06768    ), 
RET7_HUMAN  (Q96R05    ), RET7_MOUSE  (Q9EPC5    )
» more

False negative sequences
14 sequences

FABP1_FASGI (Q9UAS2    ), FABP1_FASHE (Q7M4G0    ), FABP2_FASHE (Q7M4G1    ), 
FABP3_FASHE (Q9U1G6    ), FABPL_CHAVI (P82145    ), FABPL_SCHBI (P81653    ), 
FBP12_HUMAN (A6NFH5    ), FBP12_MOUSE (Q9DAK4    ), FBP12_RAT   (B7SUM8    ), 
IOTA_GONVI  (P82025    ), RET5_BOVIN  (P82708    ), RET5_HUMAN  (P82980    ), 
RET5_PONAB  (Q5RBM7    ), UNAG_ANGJA  (P0DM59    )
» more

'Partial' sequences
2 sequences

FABPI_RHASA (P81175    ), FABPL_LETCA (P82188    )

False positive sequences
27 sequences

DPOL_METJA  (Q58295    ), FB278_ARATH (Q9FFS9    ), GLPG_PECAS  (Q6CZL3    ), 
LPTD_FRAT1  (Q14IY9    ), LPTD_FRATH  (Q2A216    ), LPTD_FRATN  (A0Q5D8    ), 
LPTD_FRATO  (Q0BKP5    ), LPTD_FRATT  (Q5NHI7    ), MFNA_PYRFU  (Q8U1P6    ), 
MFNA_PYRHO  (O58679    ), MRAZ_RICPR  (Q9ZCY1    ), MRAZ_RICTY  (Q68WG6    ), 
MUT7_CAEEL  (P34607    ), ORR12_ORYSJ (Q2HWG1    ), ORR13_ORYSJ (Q2HWG0    ), 
PYRG_NITHX  (Q1QMJ4    ), PYRG_RHOP2  (Q2IWB8    ), PYRG_RICBR  (Q1RHU4    ), 
PYRG_RICCN  (Q92I97    ), PYRG_RICFE  (Q4ULX9    ), PYRG_RICPR  (Q9ZDF1    ), 
PYRG_RICTY  (Q68WZ6    ), RRAGC_HUMAN (Q9HB90    ), RRAGC_MOUSE (Q99K70    ), 
SYFB_MESFL  (Q6F166    ), SYR_METHJ   (Q2FS66    ), ZWILC_CAEEL (Q95XP9    )
» more

[Detailed view]
236 PDB

1A18; 1A2D; 1AB0; 1ACD; 1ADL; 1AEL; 1ALB; 1B4M; 1B56; 1BLR; 1BM5; 1BWY; 1CBI; 1CBQ; 1CBR; 1CBS; 1CRB; 1DC9; 1EAL; 1EII; 1EIO; 1FDQ; 1FE3; 1FTP; 1G5W; 1G74; 1G7N; 1HMR; 1HMS; 1HMT; 1ICM; 1ICN; 1IFB; 1IFC; 1JBH; 1JJJ; 1JJX; 1KGL; 1KZW; 1KZX; 1LFO; 1LIB; 1LIC; 1LID; 1LIE; 1LIF; 1LPJ; 1MDC; 1MVG; 1MX7; 1MX8; 1O1U; 1O1V; 1O8V; 1OPA; 1OPB; 1P6P; 1PMP; 1T8V; 1TOU; 1TOW; 1TVQ; 1TW4; 1URE; 1VYF; 1VYG; 1XCA; 1YIV; 1ZRY; 2ANS; 2CBR; 2CBS; 2F73; 2FLJ; 2FR3; 2FS6; 2FS7; 2FT9; 2FTB; 2G78; 2G79; 2G7B; 2HMB; 2HNX; 2IFB; 2JN3; 2JU3; 2JU7; 2JU8; 2K62; 2L67; 2L68; 2LFO; 2LKK; 2MJI; 2MM3; 2MO5; 2NNQ; 2POA; 2PY1; 2Q9S; 2QM9; 2QO4; 2QO5; 2QO6; 2RCQ; 2RCT; 2WUT; 3AKM; 3AKN; 3B2H; 3B2I; 3B2J; 3B2K; 3B2L; 3CBS; 3CR6; 3CWK; 3D95; 3D96; 3D97; 3F8A; 3F9D; 3FA6; 3FA7; 3FA8; 3FA9; 3FEK; 3FEL; 3FEN; 3FEP; 3FR2; 3FR4; 3FR5; 3HK1; 3I17; 3IFB; 3JS1; 3JSQ; 3NR3; 3P6C; 3P6D; 3P6E; 3P6F; 3P6G; 3P6H; 3Q6L; 3RSW; 3RZY; 3STK; 3STM; 3STN; 3VG2; 3VG3; 3VG4; 3VG5; 3VG6; 3VG7; 3WBG; 3WVM; 3WXQ; 4A1H; 4A1Y; 4A60; 4A8Z; 4AZM; 4AZN; 4AZO; 4AZP; 4AZQ; 4AZR; 4BVM; 4D6A; 4D6B; 4EXZ; 4I9R; 4I9S; 4LKP; 4LKT; 4M6S; 4M7M; 4NNS; 4NNT; 4QGV; 4QGW; 4QGX; 4QYN; 4QYP; 4QZT; 4QZU; 4RUU; 4TJZ; 4TKB; 4TKH; 4TKJ; 4WBK; 4YBP; 4YBU; 4YCE; 4YCH; 4YDA; 4YDB; 4YFP; 4YFQ; 4YFR; 4YGG; 4YGH; 4YGZ; 4YH0; 4YKM; 4YKO; 4ZCB; 4ZGU; 4ZH6; 4ZH9; 4ZJ0; 4ZR2; 5C0N; 5CE4; 5D45; 5D47; 5D48; 5D4A; 5D8J; 5DG4; 5DPQ; 5EDB; 5EDC; 5H8T; 5H9A; 5HA1; 5HBS; 5HZQ; 5L8I; 5L8N; 5L8O
» more

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission