Entry: PS00218

General information about the entry

Entry name [info] AMINO_ACID_PERMEASE_1
Accession [info] PS00218
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED; 01-JUL-1999 DATA UPDATE; 05-JUL-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00191

Name and characterization of the entry

Description [info] Amino acid permeases signature.
Pattern [info] 
[STAGC]-G-[PAG]-x(2,3)-[LIVMFYWA](2)-x-[LIVMFYW]-x-[LIVMFWSTAGC](2)-
[STAGC]-x(3)-[LIVMFYWT]-x-[LIVMST]-x(3)-[LIVMCTA]-[GA]-E-x(5)-[PSAL].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_07 which contains 555'100 sequence entries.


Total number of hits 90 in 90 different sequences
Number of true positive hits 89 in 89 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 35
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 98.89 %
Recall (true positives / (true positives + false negatives)) 71.77 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 89 sequences 

AAP1_SCHPO  (Q92367    ), AAP2_NEUCR  (O59942    ), AAPA_BACSU  (O06005    ), 

AAT1_SCHPO  (Q9P5N2    ), AGP1_SACU7  (Q876K6    ), AGP1_YEAS7  (A6ZTG5    ), 
AGP1_YEAST  (P25376    ), AGP2_YEAST  (P38090    ), AGP3_YEAST  (P43548    ), 
ALP1_YEAST  (P38971    ), ANSP1_MYCBO (Q7VEQ4    ), ANSP1_MYCTO (P9WQM8    ), 
ANSP1_MYCTU (P9WQM9    ), ANSP2_MYCBO (P0A4W1    ), ANSP2_MYCTO (P9WQM6    ), 
ANSP2_MYCTU (P9WQM7    ), ANSP_ECOLI  (P77610    ), ANSP_SALTY  (P40812    ), 
ANSP_STRCO  (Q9X7P0    ), AROP_CORGL  (Q46065    ), AROP_ECO57  (Q8X968    ), 
AROP_ECOL6  (Q8FL49    ), AROP_ECOLI  (P15993    ), AROP_SALTI  (P0A188    ), 
AROP_SALTS  (E1W822    ), AROP_SALTY  (P0CK99    ), AROP_SHIFL  (P59737    ), 
BAP2_YEAST  (P38084    ), BAP3_YEAST  (P41815    ), BAUD_PSEAE  (Q9I703    ), 
CAN1_CANAL  (A0A1D8PPI5), CAN1_CANAW  (P43059    ), CAN1_YEAST  (P04817    ), 
CAN2_CANAL  (Q59WU0    ), CAN3_CANAL  (A0A1D8PPG4), CAT1_SCHPO  (Q9URZ4    ), 
CYCA_ECO57  (P0AAE1    ), CYCA_ECOL6  (A0A0H2VDI7), CYCA_ECOLI  (P0AAE0    ), 
DIP5_YEAST  (P53388    ), GABP_BACSU  (P46349    ), GABP_ECOLI  (P25527    ), 
GAP1_CANAL  (Q5AG77    ), GAP1_YEAST  (P19145    ), GAP2_CANAL  (A0A1D8PK89), 
GAP3_CANAL  (A0A1D8PN88), GAP4_CANAL  (Q59WB3    ), GAP5_CANAL  (A0A1D8PMB1), 
GNP1_YEAST  (P48813    ), HIP1_YEAST  (P06775    ), HNM1_YEAST  (P19807    ), 
HUTM_BACSU  (P42087    ), INDA1_HYPAT (P34054    ), ISP5_SCHPO  (P40901    ), 
LYP1_YEAST  (P32487    ), LYSP_ECOLI  (P25737    ), MEU22_SCHPO (O60170    ), 
MMUP_ECOLI  (Q47689    ), PHEP_ECOLI  (P24207    ), PROY_ECO57  (P0AAE4    ), 
PROY_ECOL6  (P0AAE3    ), PROY_ECOLI  (P0AAE2    ), PROY_SALTY  (P37460    ), 
PUT4_SCHPO  (Q9URZ3    ), PUT4_YEAST  (P15380    ), PUTX_EMENI  (P18696    ), 
ROCC_BACSU  (P39636    ), ROCE_BACSU  (P39137    ), SAM3_YEAST  (Q08986    ), 
TAT1_YEAST  (P38085    ), TAT2_YEAST  (P38967    ), TPO5_YEAST  (P36029    ), 
UGA4_YEAST  (P32837    ), YAO8_SCHPO  (Q10087    ), YBGF_BACSU  (O31462    ), 
YBXG_BACSU  (P54425    ), YCV4_SCHPO  (O74543    ), YDGF_BACSU  (P96704    ), 
YG64_SCHPO  (O60113    ), YH81_SCHPO  (Q9P5N4    ), YHE1_SCHPO  (Q9HDV2    ), 
YI26_SCHPO  (Q9P768    ), YIFK_ECOLI  (P27837    ), YIFK_SALTI  (P0A190    ), 
YIFK_SALTY  (P0A189    ), YP51_SCHPO  (B5BP45    ), YPEV_LACDL  (P45495    ), 
YQD2_SCHPO  (Q9C0V0    ), YTNA_BACSU  (O34618    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 35 sequences 

GPT1_CANAX  (O74248    ), MMP1_YEAST  (Q12372    ), PLAP_ECO57  (P0AA48    ), 

PLAP_ECOLI  (P0AA47    ), PUUP_ECOLI  (P76037    ), SSY1_YEAST  (Q03770    ), 
STET_BACSU  (O34739    ), THI9_SCHPO  (Q9UT18    ), Y093_RHIME  (O87394    ), 
Y1691_LEGPH (P37034    ), Y1979_MYCTO (P9WQM4    ), Y1979_MYCTU (P9WQM5    ), 
Y1999_MYCTO (P9WQM2    ), Y1999_MYCTU (P9WQM3    ), Y2001_MYCBO (Q7TZ67    ), 
Y2022_MYCBO (P63350    ), YBAT_ECOLI  (P77400    ), YC9D_SCHPO  (Q09887    ), 
YCGH_BACSU  (P94383    ), YCQ4_SCHPO  (O74537    ), YCT3_SCHPO  (O59813    ), 
YCUB_SCHPO  (O59831    ), YDAO_BACSU  (P96589    ), YECA_BACSU  (O34560    ), 
YFZ1_SCHPO  (Q9US40    ), YKAA_CAEEL  (P34261    ), YLAT1_HUMAN (Q9UM01    ), 
YLAT1_MOUSE (Q9Z1K8    ), YLAT1_RAT   (Q9R0S5    ), YLAT2_DANRE (Q59I64    ), 
YLAT2_HUMAN (Q92536    ), YLAT2_MOUSE (Q8BGK6    ), YLAT2_XENLA (A1L3M3    ), 
YLAT2_XENTR (Q28I80    ), YVBW_BACSU  (O32257    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

PLAP_KLEPN  (P37103    )


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			1 sequence
			


			
FAM3B_HUMAN (P58499    )


				
	





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