Entry: PS00238

General information about the entry

Entry name [info] OPSIN
Accession [info] PS00238
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00211

Name and characterization of the entry

Description [info] Visual pigments (opsins) retinal binding site.
Pattern [info]
[LIVMFWAC]-[PSGAC]-x-{G}-x-[SAC]-K-[STALIMR]-[GSACPNV]-[STACP]-x(2)-
[DENF]-[AP]-x(2)-[IY].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_06 which contains 551'385 sequence entries.


Total number of hits 228 in 227 different sequences
Number of true positive hits 218 in 217 different sequences
Number of 'unknown' hits 0
Number of false positive hits 10 in 10 different sequences
Number of false negative sequences 2
Number of 'partial' sequences 3
Precision (true positives / (true positives + false positives)) 95.61 %
Recall (true positives / (true positives + false negatives)) 99.09 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 2
Site [info] retinal at position 7
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
217 sequences

OP1S1_DANRE (Q9W6A9    ), OP1S2_DANRE (Q9W6A8    ), OPN3_HUMAN  (Q9H1Y3    ), 
OPN3_MOUSE  (Q9WUK7    ), OPN4A_DANRE (Q2KNE5    ), OPN4A_GADMO (Q804X9    ), 
OPN4B_GADMO (Q804Q2    ), OPN4B_XENLA (O57422    ), OPN4L_DANRE (Q1JPS6    ), 
OPN4_FELCA  (Q5YKK9    ), OPN4_HUMAN  (Q9UHM6    ), OPN4_MOUSE  (Q9QXZ9    ), 
OPN4_PHOSU  (Q5XXP2    ), OPN4_PODSI  (Q4U4D2    ), OPN4_RAT    (Q8R456    ), 
OPN4_RUTRU  (Q6XL69    ), OPN5_HUMAN  (Q6U736    ), OPN5_MOUSE  (Q6VZZ7    ), 
OPS1_CALVI  (P22269    ), OPS1_DROME  (P06002    ), OPS1_DROPS  (P28678    ), 
OPS1_MANSE  (O02464    ), OPS1_SCHGR  (Q94741    ), OPS2_DROME  (P08099    ), 
OPS2_DROPS  (P28679    ), OPS2_SCHGR  (Q26495    ), OPS3_DROME  (P04950    ), 
OPS3_DROPS  (P28680    ), OPS4_DROME  (P08255    ), OPS4_DROPS  (P29404    ), 
OPS4_DROVI  (P17646    ), OPS5_DROME  (P91657    ), OPS6_DROME  (O01668    ), 
OPSB_ANOCA  (P51471    ), OPSB_APIME  (P90680    ), OPSB_ASTFA  (P51472    ), 
OPSB_BOVIN  (P51490    ), OPSB_CARAU  (P32310    ), OPSB_CHICK  (P28682    ), 
OPSB_CONCO  (O13227    ), OPSB_GECGE  (P35357    ), OPSB_HUMAN  (P03999    ), 
OPSB_MOUSE  (P51491    ), OPSB_ORYLA  (P87365    ), OPSB_PANPA  (P60573    ), 
OPSB_PANTR  (P60015    ), OPSB_RAT    (Q63652    ), OPSB_SAIBB  (O13092    ), 
OPSC1_HEMSA (Q25157    ), OPSC2_HEMSA (Q25158    ), OPSCE_BOMMO (Q95YI3    ), 
OPSD1_ANGAN (Q90214    ), OPSD1_MIZYE (O15973    ), OPSD2_ANGAN (Q90215    ), 
OPSD2_MIZYE (O15974    ), OPSD_ABYKO  (O42294    ), OPSD_ALLMI  (P52202    ), 
OPSD_ALLSU  (Q17094    ), OPSD_AMBTI  (Q90245    ), OPSD_ANOCA  (P41591    ), 
OPSD_APIME  (Q17053    ), OPSD_ASTFA  (P41590    ), OPSD_ATHBO  (Q9YGZ1    ), 
OPSD_BATMU  (O42300    ), OPSD_BATNI  (O42301    ), OPSD_BOVIN  (P02699    ), 
OPSD_BUFBU  (P56514    ), OPSD_CALPD  (Q6W3E1    ), OPSD_CAMAT  (Q17292    ), 
OPSD_CAMHU  (O18312    ), OPSD_CAMLU  (O16017    ), OPSD_CAMMA  (O18315    ), 
OPSD_CAMSC  (O16018    ), OPSD_CANLF  (P32308    ), OPSD_CARAU  (P32309    ), 
OPSD_CATBO  (Q17296    ), OPSD_CHELB  (Q9YGZ8    ), OPSD_CHICK  (P22328    ), 
OPSD_COMDY  (O42327    ), OPSD_CORAU  (Q90305    ), OPSD_COTBO  (O42307    ), 
OPSD_COTGR  (O42328    ), OPSD_COTIN  (O42330    ), OPSD_CRIGR  (P28681    ), 
OPSD_CYPCA  (P51488    ), OPSD_DANRE  (P35359    ), OPSD_DELDE  (O62791    ), 
OPSD_DICLA  (Q9YGZ4    ), OPSD_DIPAN  (Q9YH05    ), OPSD_DIPVU  (Q9YH04    ), 
OPSD_ENTDO  (P09241    ), OPSD_FELCA  (Q95KU1    ), OPSD_GALML  (O93441    ), 
OPSD_GAMAF  (P79756    ), OPSD_GLOME  (O62792    ), OPSD_GOBNI  (Q9YGZ2    ), 
OPSD_HUMAN  (P08100    ), OPSD_ICTPU  (O42268    ), OPSD_LEOKE  (Q90373    ), 
OPSD_LETCA  (P22671    ), OPSD_LEUER  (P79863    ), OPSD_LIMBE  (O42427    ), 
OPSD_LIMPA  (O42431    ), OPSD_LITCT  (P51470    ), OPSD_LITMO  (Q9YH00    ), 
OPSD_LITPI  (P31355    ), OPSD_LIZAU  (Q9YGZ6    ), OPSD_LIZSA  (Q9YGZ7    ), 
OPSD_LOLFO  (P24603    ), OPSD_LOXAF  (Q68J47    ), OPSD_MACFA  (Q28886    ), 
OPSD_MESBI  (O62793    ), OPSD_MOUSE  (P15409    ), OPSD_MUGCE  (Q9YGZ9    ), 
OPSD_MULSU  (Q9YH01    ), OPSD_MYRBE  (P79798    ), OPSD_MYRVI  (P79807    ), 
OPSD_NEOAR  (P79808    ), OPSD_NEOAU  (P79809    ), OPSD_NEOSA  (P79812    ), 
OPSD_ORCAU  (O18481    ), OPSD_ORCVI  (O16019    ), OPSD_ORYLA  (P87369    ), 
OPSD_OTOCR  (Q769E8    ), OPSD_PAGGO  (O62795    ), OPSD_PARKN  (O42452    ), 
OPSD_PETMA  (Q98980    ), OPSD_PHOVI  (O62794    ), OPSD_PIG    (O18766    ), 
OPSD_POERE  (P79848    ), OPSD_POMMI  (P35403    ), OPSD_PROCL  (P35356    ), 
OPSD_PROJE  (O42451    ), OPSD_PROML  (O16020    ), OPSD_PROOR  (O18485    ), 
OPSD_PROSE  (O18486    ), OPSD_RABIT  (P49912    ), OPSD_RANTE  (P56516    ), 
OPSD_RAT    (P51489    ), OPSD_RHIMB  (P56515    ), OPSD_SALPV  (Q9YGZ3    ), 
OPSD_SARDI  (P79898    ), OPSD_SARMI  (P79901    ), OPSD_SARPI  (Q9YGZ0    ), 
OPSD_SARPU  (P79902    ), OPSD_SARSL  (Q9YH03    ), OPSD_SARSP  (P79903    ), 
OPSD_SARTI  (P79911    ), OPSD_SARXA  (P79914    ), OPSD_SCYCA  (O93459    ), 
OPSD_SEPOF  (O16005    ), OPSD_SHEEP  (P02700    ), OPSD_SMICR  (Q8HY69    ), 
OPSD_SOLSO  (Q9YGZ5    ), OPSD_SPAAU  (Q9YH02    ), OPSD_SPHSP  (P35362    ), 
OPSD_TAUBU  (O42466    ), OPSD_TETNG  (Q9DGG4    ), OPSD_TODPA  (P31356    ), 
OPSD_TRIMA  (O62796    ), OPSD_TURTR  (O62798    ), OPSD_XENLA  (P29403    ), 
OPSD_ZEUFA  (O42604    ), OPSD_ZOSOP  (Q9YGY9    ), OPSG1_ASTFA (P22330    ), 
OPSG1_CARAU (P32311    ), OPSG1_DANRE (Q9W6A5    ), OPSG2_ASTFA (P22331    ), 
OPSG2_CARAU (P32312    ), OPSG2_DANRE (Q8AYM8    ), OPSG2_HUMAN (P0DN77    ), 
OPSG3_ASTFA (P51474    ), OPSG3_DANRE (Q8AYM7    ), OPSG3_HUMAN (P0DN78    ), 
OPSG4_DANRE (Q9W6A6    ), OPSG_CAVPO  (Q9R024    ), OPSG_CHICK  (P28683    ), 
OPSG_GECGE  (P35358    ), OPSG_HUMAN  (P04001    ), OPSG_MOUSE  (O35599    ), 
OPSG_ORYLA  (P87366    ), OPSG_RABIT  (O18910    ), OPSG_RAT    (O35476    ), 
OPSG_SCICA  (O35478    ), OPSL_CALJA  (P34989    ), OPSL_LIMPO  (P35360    ), 
OPSO_LIMPO  (P35361    ), OPSO_RUTRU  (Q7T3Q7    ), OPSO_SALSA  (O13018    ), 
OPSP_CHICK  (P51475    ), OPSP_COLLI  (P51476    ), OPSP_ICTPU  (O42266    ), 
OPSP_PETMA  (O42490    ), OPSR1_DANRE (Q9W6A7    ), OPSR2_DANRE (Q8AYN0    ), 
OPSR_ANOCA  (P41592    ), OPSR_ASTFA  (P22332    ), OPSR_BOVIN  (Q9BGI7    ), 
OPSR_CANLF  (O18914    ), OPSR_CAPHI  (Q95170    ), OPSR_CARAU  (P32313    ), 
OPSR_CHICK  (P22329    ), OPSR_FELCA  (O18913    ), OPSR_HUMAN  (P04000    ), 
OPSR_ORYLA  (P87367    ), OPSR_XENLA  (O12948    ), OPSUV_APIME (O61303    ), 
OPSUV_CARAU (Q90309    ), OPSUV_MELUD (O57605    ), OPSV_CHICK  (P28684    ), 
OPSV_ORYLA  (P87368    ), OPSV_XENLA  (P51473    ), OPSX_HUMAN  (O14718    ), 
OPSX_MOUSE  (O35214    ), REIS_TODPA  (P23820    ), RGR_BOVIN   (P47803    ), 
RGR_HUMAN   (P47804    )
» more

UniProtKB/Swiss-Prot
False negative sequences
2 sequences

OPN4_BRABE  (Q4R1I4    ), RGR_MOUSE   (Q9Z2B3    )

		
UniProtKB/Swiss-Prot
'Partial' sequences
3 sequences

OPS3_DROVI  (P17645    ), OPSG_ODOVI  (O18911    ), OPSR_HORSE  (O18912    )

		
UniProtKB/Swiss-Prot
False positive sequences
10 sequences

EFTS_ACISJ  (A1W917    ), GPRL1_HUMAN (Q6UWM5    ), OADB_PASMU  (Q9CL24    ), 
POLS_CHIKN  (Q5WQY5    ), POLS_CHIKS  (Q8JUX5    ), POLS_ONNVG  (P22056    ), 
POLS_ONNVI  (O90371    ), POLS_ONNVS  (O90369    ), POL_HTL1L   (P0C211    ), 
RBP17_MOUSE (Q99NF8    )
» more

PDB
[Detailed view]
35 PDB

1F88; 1GZM; 1HZX; 1JFP; 1L9H; 1LN6; 1U19; 2G87; 2HPY; 2I35; 2I36; 2I37; 2J4Y; 2PED; 2X72; 2Z73; 2ZIY; 3AYM; 3AYN; 3C9L; 3C9M; 3CAP; 3DQB; 3OAX; 3PQR; 3PXO; 4A4M; 4BEY; 4BEZ; 4J4Q; 4PXF; 4WW3; 4X1H; 4ZWJ; 5DGY
» more

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