Entry: PS00238

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General information about the entry

Entry name [info] OPSIN
Accession [info] PS00238
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00211

Name and characterization of the entry

Description [info] Visual pigments (opsins) retinal binding site.
Pattern [info]
[LIVMFWAC]-[PSGAC]-x-{G}-x-[SAC]-K-[STALIMR]-[GSACPNV]-[STACP]-x(2)-
[DENF]-[AP]-x(2)-[IY].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 226 in 225 different sequences
Number of true positive hits 216 in 215 different sequences
Number of 'unknown' hits
Number of false positive hits 10 in 10 different sequences
Number of false negative sequences 2
Number of 'partial' sequences 3
Precision (true positives / (true positives + false positives)) 95.58 %
Recall (true positives / (true positives + false negatives)) 99.08 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 2
Site [info] retinal at position 7
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
215 sequences

OP1S1_DANRE (Q9W6A9), OP1S2_DANRE (Q9W6A8), OPN3_HUMAN  (Q9H1Y3), 
OPN3_MOUSE  (Q9WUK7), OPN4A_DANRE (Q2KNE5), OPN4A_GADMO (Q804X9), 
OPN4B_GADMO (Q804Q2), OPN4B_XENLA (O57422), OPN4L_DANRE (Q1JPS6), 
OPN4_FELCA  (Q5YKK9), OPN4_HUMAN  (Q9UHM6), OPN4_MOUSE  (Q9QXZ9), 
OPN4_PHOSU  (Q5XXP2), OPN4_PODSI  (Q4U4D2), OPN4_RAT    (Q8R456), 
OPN4_RUTRU  (Q6XL69), OPN5_HUMAN  (Q6U736), OPN5_MOUSE  (Q6VZZ7), 
OPS1_CALVI  (P22269), OPS1_DROME  (P06002), OPS1_DROPS  (P28678), 
OPS1_MANSE  (O02464), OPS1_SCHGR  (Q94741), OPS2_DROME  (P08099), 
OPS2_DROPS  (P28679), OPS2_SCHGR  (Q26495), OPS3_DROME  (P04950), 
OPS3_DROPS  (P28680), OPS4_DROME  (P08255), OPS4_DROPS  (P29404), 
OPS4_DROVI  (P17646), OPS5_DROME  (P91657), OPS6_DROME  (O01668), 
OPSB_ANOCA  (P51471), OPSB_APIME  (P90680), OPSB_ASTFA  (P51472), 
OPSB_BOVIN  (P51490), OPSB_CARAU  (P32310), OPSB_CHICK  (P28682), 
OPSB_CONCO  (O13227), OPSB_GECGE  (P35357), OPSB_HUMAN  (P03999), 
OPSB_MOUSE  (P51491), OPSB_ORYLA  (P87365), OPSB_PANPA  (P60573), 
OPSB_PANTR  (P60015), OPSB_RAT    (Q63652), OPSB_SAIBB  (O13092), 
OPSC1_HEMSA (Q25157), OPSC2_HEMSA (Q25158), OPSCE_BOMMO (Q95YI3), 
OPSD1_ANGAN (Q90214), OPSD1_MIZYE (O15973), OPSD2_ANGAN (Q90215), 
OPSD2_MIZYE (O15974), OPSD_ABYKO  (O42294), OPSD_ALLMI  (P52202), 
OPSD_ALLSU  (Q17094), OPSD_AMBTI  (Q90245), OPSD_ANOCA  (P41591), 
OPSD_APIME  (Q17053), OPSD_ASTFA  (P41590), OPSD_ATHBO  (Q9YGZ1), 
OPSD_BATMU  (O42300), OPSD_BATNI  (O42301), OPSD_BOVIN  (P02699), 
OPSD_BUFBU  (P56514), OPSD_BUFMA  (P56515), OPSD_CALPD  (Q6W3E1), 
OPSD_CAMAT  (Q17292), OPSD_CAMHU  (O18312), OPSD_CAMLU  (O16017), 
OPSD_CAMMA  (O18315), OPSD_CAMSC  (O16018), OPSD_CANFA  (P32308), 
OPSD_CARAU  (P32309), OPSD_CATBO  (Q17296), OPSD_CHELB  (Q9YGZ8), 
OPSD_CHICK  (P22328), OPSD_COMDY  (O42327), OPSD_CORAU  (Q90305), 
OPSD_COTBO  (O42307), OPSD_COTGR  (O42328), OPSD_COTIN  (O42330), 
OPSD_CRIGR  (P28681), OPSD_CYPCA  (P51488), OPSD_DANRE  (P35359), 
OPSD_DELDE  (O62791), OPSD_DICLA  (Q9YGZ4), OPSD_DIPAN  (Q9YH05), 
OPSD_DIPVU  (Q9YH04), OPSD_ENTDO  (P09241), OPSD_FELCA  (Q95KU1), 
OPSD_GALML  (O93441), OPSD_GAMAF  (P79756), OPSD_GLOME  (O62792), 
OPSD_GOBNI  (Q9YGZ2), OPSD_HUMAN  (P08100), OPSD_ICTPU  (O42268), 
OPSD_LAMJA  (P22671), OPSD_LEOKE  (Q90373), OPSD_LEUER  (P79863), 
OPSD_LIMBE  (O42427), OPSD_LIMPA  (O42431), OPSD_LITCT  (P51470), 
OPSD_LITMO  (Q9YH00), OPSD_LITPI  (P31355), OPSD_LIZAU  (Q9YGZ6), 
OPSD_LIZSA  (Q9YGZ7), OPSD_LOLFO  (P24603), OPSD_LOXAF  (Q68J47), 
OPSD_MACFA  (Q28886), OPSD_MESBI  (O62793), OPSD_MOUSE  (P15409), 
OPSD_MUGCE  (Q9YGZ9), OPSD_MULSU  (Q9YH01), OPSD_MYRBE  (P79798), 
OPSD_MYRVI  (P79807), OPSD_NEOAR  (P79808), OPSD_NEOAU  (P79809), 
OPSD_NEOSA  (P79812), OPSD_ORCAU  (O18481), OPSD_ORCVI  (O16019), 
OPSD_ORYLA  (P87369), OPSD_OTOCR  (Q769E8), OPSD_PAGGO  (O62795), 
OPSD_PARKN  (O42452), OPSD_PETMA  (Q98980), OPSD_PHOVI  (O62794), 
OPSD_PIG    (O18766), OPSD_POERE  (P79848), OPSD_POMMI  (P35403), 
OPSD_PROCL  (P35356), OPSD_PROJE  (O42451), OPSD_PROML  (O16020), 
OPSD_PROOR  (O18485), OPSD_PROSE  (O18486), OPSD_RABIT  (P49912), 
OPSD_RANTE  (P56516), OPSD_RAT    (P51489), OPSD_SALPV  (Q9YGZ3), 
OPSD_SARDI  (P79898), OPSD_SARMI  (P79901), OPSD_SARPI  (Q9YGZ0), 
OPSD_SARPU  (P79902), OPSD_SARSL  (Q9YH03), OPSD_SARSP  (P79903), 
OPSD_SARTI  (P79911), OPSD_SARXA  (P79914), OPSD_SCYCA  (O93459), 
OPSD_SEPOF  (O16005), OPSD_SHEEP  (P02700), OPSD_SMICR  (Q8HY69), 
OPSD_SOLSO  (Q9YGZ5), OPSD_SPAAU  (Q9YH02), OPSD_SPHSP  (P35362), 
OPSD_TAUBU  (O42466), OPSD_TETNG  (Q9DGG4), OPSD_TODPA  (P31356), 
OPSD_TRIMA  (O62796), OPSD_TURTR  (O62798), OPSD_XENLA  (P29403), 
OPSD_ZEUFA  (O42604), OPSD_ZOSOP  (Q9YGY9), OPSG1_ASTFA (P22330), 
OPSG1_CARAU (P32311), OPSG1_DANRE (Q9W6A5), OPSG2_ASTFA (P22331), 
OPSG2_CARAU (P32312), OPSG2_DANRE (Q8AYM8), OPSG3_ASTFA (P51474), 
OPSG3_DANRE (Q8AYM7), OPSG4_DANRE (Q9W6A6), OPSG_CAVPO  (Q9R024), 
OPSG_CHICK  (P28683), OPSG_GECGE  (P35358), OPSG_HUMAN  (P04001), 
OPSG_MOUSE  (O35599), OPSG_ORYLA  (P87366), OPSG_RABIT  (O18910), 
OPSG_RAT    (O35476), OPSG_SCICA  (O35478), OPSL_CALJA  (P34989), 
OPSL_LIMPO  (P35360), OPSO_LIMPO  (P35361), OPSO_RUTRU  (Q7T3Q7), 
OPSO_SALSA  (O13018), OPSP_CHICK  (P51475), OPSP_COLLI  (P51476), 
OPSP_ICTPU  (O42266), OPSP_PETMA  (O42490), OPSR1_DANRE (Q9W6A7), 
OPSR2_DANRE (Q8AYN0), OPSR_ANOCA  (P41592), OPSR_ASTFA  (P22332), 
OPSR_BOVIN  (Q9BGI7), OPSR_CANFA  (O18914), OPSR_CAPHI  (Q95170), 
OPSR_CARAU  (P32313), OPSR_CHICK  (P22329), OPSR_FELCA  (O18913), 
OPSR_HUMAN  (P04000), OPSR_ORYLA  (P87367), OPSR_XENLA  (O12948), 
OPSUV_APIME (O61303), OPSUV_CARAU (Q90309), OPSUV_MELUD (O57605), 
OPSV_CHICK  (P28684), OPSV_ORYLA  (P87368), OPSV_XENLA  (P51473), 
OPSX_HUMAN  (O14718), OPSX_MOUSE  (O35214), REIS_TODPA  (P23820), 
RGR_BOVIN   (P47803), RGR_HUMAN   (P47804)
» More

UniProtKB/Swiss-Prot
False negative sequences
2 sequences

OPN4_BRABE  (Q4R1I4), RGR_MOUSE   (Q9Z2B3)

		
UniProtKB/Swiss-Prot
'Partial' sequences
3 sequences

OPS3_DROVI  (P17645), OPSG_ODOVI  (O18911), OPSR_HORSE  (O18912)

		
UniProtKB/Swiss-Prot
False positive sequences
10 sequences

EFTS_ACISJ  (A1W917), GPRL1_HUMAN (Q6UWM5), OADB_PASMU  (Q9CL24), 
POLS_CHIKN  (Q5WQY5), POLS_CHIKS  (Q8JUX5), POLS_ONNVG  (P22056), 
POLS_ONNVI  (O90371), POLS_ONNVS  (O90369), POL_HTL1L   (P0C211), 
RBP17_MOUSE (Q99NF8)
» More

PDB
[Detailed view]
30 PDB

1F88; 1GZM; 1HZX; 1JFP; 1L9H; 1LN6; 1U19; 2G87; 2HPY; 2I35; 2I36; 2I37; 2J4Y; 2PED; 2X72; 2Z73; 2ZIY; 3AYM; 3AYN; 3C9L; 3C9M; 3CAP; 3DQB; 3OAX; 3PQR; 3PXO; 4A4M; 4BEY; 4BEZ; 4J4Q
» More

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