Entry: PS00244

Forthcoming changes to the profile format
General information about the entry

Entry name [info] REACTION_CENTER
Accession [info] PS00244
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2001 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00217

Name and characterization of the entry

Description [info] Photosynthetic reaction center proteins signature.
Pattern [info]
[NQH]-x(4)-P-x-H-x(2)-[SAG]-x(11)-[SAGC]-x-H-[SAG](2).

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 407 in 407 different sequences
Number of true positive hits 407 in 407 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 98.31 %

Comments [info]

Taxonomic range [info] Bacteriophages, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] magnesium at position 5
Site [info] iron at position 11
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
407 sequences

PSBA1_ACAM1 (B0CB14), PSBA1_ANAVT (Q3MCT0), PSBA1_GLOVI (Q7M7A9), 
PSBA1_NOSS1 (P46242), PSBA1_SYNE7 (P04996), PSBA1_SYNEL (P0A445), 
PSBA1_SYNJA (Q2JTJ2), PSBA1_SYNP2 (B1XM24), PSBA1_SYNP6 (Q5N5R2), 
PSBA1_SYNPW (A5GIM7), PSBA1_SYNPX (Q7TTJ7), PSBA1_SYNR3 (A5GTY4), 
PSBA1_SYNS3 (Q0I7J2), PSBA1_SYNS9 (Q3AYB8), PSBA1_SYNSC (Q3AM89), 
PSBA1_SYNY3 (P07826), PSBA1_THEEB (P0A444), PSBA1_TRIEI (Q11A00), 
PSBA2_ACAM1 (A5A8K9), PSBA2_ANAVT (Q3MAB1), PSBA2_GLOVI (Q7NJX5), 
PSBA2_NOSS1 (P31694), PSBA2_SYNE7 (P04997), PSBA2_SYNEL (P0A447), 
PSBA2_SYNJB (Q2JP67), PSBA2_SYNP2 (B1XMC3), PSBA2_SYNP6 (Q5N4D2), 
PSBA2_SYNPW (A5GJU5), PSBA2_SYNPX (Q7U669), PSBA2_SYNR3 (A5GTY5), 
PSBA2_SYNS3 (Q0I912), PSBA2_SYNS9 (Q3AV15), PSBA2_SYNSC (Q3AKT2), 
PSBA2_SYNY3 (P16033), PSBA2_THEEB (P0A446), PSBA2_TRIEI (Q10VK7), 
PSBA3_ANAVT (Q3MB78), PSBA3_GLOVI (Q7NH81), PSBA3_NOSS1 (Q8YQS7), 
PSBA3_SYNJA (Q2JTM8), PSBA3_SYNP2 (B1XIP3), PSBA3_SYNP6 (Q5N337), 
PSBA3_SYNPX (Q7U4Z3), PSBA3_SYNS3 (Q0I910), PSBA3_THEEB (Q8DIV4), 
PSBA4_ANAVT (Q3M5L6), PSBA_ACOCL  (Q3V554), PSBA_ACUOB  (Q1KVU8), 
PSBA_ADICA  (Q85C23), PSBA_AETCO  (A4QJ96), PSBA_AETGR  (A4QJI0), 
PSBA_AGRST  (A1E9Y8), PSBA_ALETA  (Q9TM69), PSBA_AMAHY  (P02956), 
PSBA_AMBTC  (Q70Y17), PSBA_ANEMR  (B0YPN1), PSBA_ANGEV  (A2T309), 
PSBA_ANTFO  (Q85BH5), PSBA_ANTSP  (P24625), PSBA_ARAHI  (A4QJZ9), 
PSBA_ARATH  (P83755), PSBA_ATRBE  (Q7FNT3), PSBA_BARVE  (A4QK85), 
PSBA_BIGNA  (Q06J41), PSBA_BRANA  (P18290), PSBA_BUMFI  (P48265), 
PSBA_BUXMI  (A6MM16), PSBA_CALFG  (Q7YJY8), PSBA_CAPBU  (A4QKH2), 
PSBA_CARPA  (B1A915), PSBA_CERDE  (A8SE40), PSBA_CHAGL  (Q8M9W3), 
PSBA_CHAVU  (Q1ACM1), PSBA_CHLAT  (Q19VC4), PSBA_CHLEL  (P35860), 
PSBA_CHLMO  (P09752), PSBA_CHLRE  (P07753), PSBA_CHLSC  (A6MMA2), 
PSBA_CHLVU  (P56318), PSBA_CITSI  (Q09MJ8), PSBA_COFAR  (A0A315), 
PSBA_CONCI  (Q9T351), PSBA_CONSU  (Q9TNF8), PSBA_CRUWA  (A4QKR1), 
PSBA_CRYJA  (B1VKF9), PSBA_CUCSA  (Q2QDA8), PSBA_CUSEX  (A8W3A5), 
PSBA_CUSGR  (A7M8Y6), PSBA_CUSOB  (A8W3H2), PSBA_CUSRE  (P32036), 
PSBA_CYAA5  (P51759), PSBA_CYACA  (O19895), PSBA_CYAME  (Q85G59), 
PSBA_CYAPA  (P12719), PSBA_CYCTA  (A6H5E4), PSBA_DAUCA  (Q0G9Y2), 
PSBA_DIOEL  (A6MMI8), PSBA_DRANE  (A4QL00), PSBA_DRIGR  (Q06H17), 
PSBA_DUMHI  (Q9TNF7), PSBA_ECTSI  (P24726), PSBA_EMIHU  (Q4G3F2), 
PSBA_EUCGG  (Q49L18), PSBA_EUGGR  (P06631), PSBA_GALSU  (P24725), 
PSBA_GNEPA  (A6BM28), PSBA_GOSBA  (A0ZZ15), PSBA_GOSHI  (P69564), 
PSBA_GRATL  (Q6B929), PSBA_GUITH  (O78446), PSBA_GYMMI  (Q9TJ82), 
PSBA_HELAN  (Q1KXX9), PSBA_HETCA  (Q32389), PSBA_HETNI  (Q9MSC0), 
PSBA_HETPY  (Q9MSC1), PSBA_HETRO  (Q9MSC2), PSBA_HETTR  (Q9XQV1), 
PSBA_HORVU  (P05337), PSBA_HUPLU  (Q5SCW8), PSBA_ILLOL  (A6MMS4), 
PSBA_IPOPU  (A7Y395), PSBA_JASNU  (Q06RF1), PSBA_LACSA  (P69557), 
PSBA_LEMMI  (A9L976), PSBA_LEPTE  (A6YGB8), PSBA_LEPVR  (A4QL86), 
PSBA_LIRTU  (Q0G9N9), PSBA_LOBMA  (A4QLH5), PSBA_LOLPR  (A8Y9F0), 
PSBA_LOTJA  (Q9BBU3), PSBA_MAGPY  (O98736), PSBA_MAIZE  (P48183), 
PSBA_MANES  (B1NWD0), PSBA_MARPO  (P06402), PSBA_MASLA  (Q9S3W5), 
PSBA_MEDSA  (P04998), PSBA_MESVI  (Q9MUW0), PSBA_MICAE  (P51764), 
PSBA_MICAN  (B0JIS8), PSBA_MICDP  (P07063), PSBA_MORIN  (Q09X37), 
PSBA_NANDO  (Q09FY1), PSBA_NASOF  (A4QLR3), PSBA_NEPOL  (Q9TL35), 
PSBA_NICDE  (P69561), PSBA_NICPL  (P69562), PSBA_NICSY  (Q3C1G3), 
PSBA_NICTO  (Q33C59), PSBA_NYMAL  (Q6EW68), PSBA_ODOSI  (P49460), 
PSBA_OENAR  (B0Z4K6), PSBA_OENBI  (B0Z4U0), PSBA_OENEH  (P83756), 
PSBA_OENGL  (B0Z524), PSBA_OENPA  (B0Z5A8), PSBA_OLIPU  (A4QJR4), 
PSBA_OLTVI  (Q20ET2), PSBA_ORYNI  (Q6ENJ7), PSBA_ORYSA  (P0C432), 
PSBA_ORYSI  (P0C433), PSBA_ORYSJ  (P0C434), PSBA_OSTTA  (Q0P3J1), 
PSBA_OXYRB  (P69565), PSBA_PALPL  (O98733), PSBA_PANGI  (Q68S26), 
PSBA_PEA    (P06585), PSBA_PELHO  (Q06FY1), PSBA_PETHY  (P04999), 
PSBA_PHAAO  (Q3BAR4), PSBA_PHATC  (A0T0G9), PSBA_PHAVU  (Q01366), 
PSBA_PICAB  (P50155), PSBA_PINCO  (P69550), PSBA_PINKO  (Q85WS3), 
PSBA_PINTH  (P69551), PSBA_PIPCE  (Q06GT0), PSBA_PLAOC  (Q09G66), 
PSBA_POPAL  (Q14FH6), PSBA_POPDE  (P36491), PSBA_POPTR  (A4GYN9), 
PSBA_PORPU  (P51212), PSBA_PROHO  (P15191), PSBA_PROM0  (A3PAU3), 
PSBA_PROM1  (A2C057), PSBA_PROM2  (A8G5N5), PSBA_PROM3  (A2C6Q1), 
PSBA_PROM5  (A2BUK1), PSBA_PROM9  (Q31A92), PSBA_PROMA  (P46895), 
PSBA_PROMC  (Q9TM72), PSBA_PROMM  (Q7TTH6), PSBA_PROMP  (Q7V365), 
PSBA_PROMS  (A2BP21), PSBA_PROMT  (Q46JV2), PSBA_PSEAK  (Q3ZJ60), 
PSBA_PSINU  (Q8WI36), PSBA_PYRYE  (Q1XDS5), PSBA_RHDSA  (A6MVT2), 
PSBA_SACHY  (Q6L3B5), PSBA_SACOF  (P0C157), PSBA_SECCE  (P10510), 
PSBA_SELUN  (Q2WGI0), PSBA_SINAL  (P11848), PSBA_SOLBU  (Q2MIK7), 
PSBA_SOLLC  (Q2MIC0), PSBA_SOLNI  (P69563), PSBA_SOLTU  (Q2VEJ6), 
PSBA_SORBI  (A1E9Q4), PSBA_SOYBN  (P02957), PSBA_SPIOG  (P27201), 
PSBA_SPIOL  (P69560), PSBA_STAPU  (Q32RX1), PSBA_STIHE  (Q06SD2), 
PSBA_SYNY4  (P14660), PSBA_THAPS  (A0T0W2), PSBA_THEVL  (P51765), 
PSBA_TOBAC  (P69556), PSBA_TRIAZ  (P29270), PSBA_VICFA  (P13910), 
PSBA_VIGUN  (Q33282), PSBA_VITVI  (Q0ZJ40), PSBA_WHEAT  (P12463), 
PSBA_ZYGCR  (Q32RM3), PSBD1_ACAM1 (B0C1V6), PSBD1_SYNP6 (Q5N3Q7), 
PSBD2_ACAM1 (B0C3P0), PSBD2_SYNP6 (Q5MZ82), PSBD_ACOAM  (Q4FFP4), 
PSBD_ACOCL  (Q3V539), PSBD_ACUOB  (Q1KVW6), PSBD_ADICA  (Q85FM2), 
PSBD_AETCO  (A4QJB0), PSBD_AETGR  (A4QJJ4), PSBD_AGRST  (A1E9Z3), 
PSBD_AMBTC  (Q70Y08), PSBD_ANAVT  (Q3MA59), PSBD_ANGEV  (A2T330), 
PSBD_ANTFO  (Q85AC9), PSBD_ANTMA  (P69685), PSBD_ARAHI  (A4QK13), 
PSBD_ARATH  (P56761), PSBD_ATRBE  (Q8S8X8), PSBD_BARVE  (A4QKA0), 
PSBD_BIGNA  (Q06J67), PSBD_BPSYP  (Q7Y4H2), PSBD_BRADI  (B3TNB8), 
PSBD_BUXMI  (A6MM31), PSBD_CALFG  (Q7YJX7), PSBD_CAPBU  (A4QKI7), 
PSBD_CARPA  (B1A930), PSBD_CERDE  (A8SE98), PSBD_CHAGL  (Q8M9W4), 
PSBD_CHAVU  (Q1ACJ7), PSBD_CHLAT  (Q19VC7), PSBD_CHLRE  (P06007), 
PSBD_CHLSC  (A6MMB7), PSBD_CHLVU  (P56319), PSBD_CICAR  (B5LMM1), 
PSBD_CITSI  (Q09MI3), PSBD_COFAR  (A0A330), PSBD_CRUWA  (A4QKS6), 
PSBD_CRYJA  (B1VKH0), PSBD_CUCSA  (Q4VZN8), PSBD_CUSEX  (A8W3B9), 
PSBD_CUSGR  (A7M8Z6), PSBD_CUSOB  (A8W3I2), PSBD_CUSRE  (A7M961), 
PSBD_CUSSA  (Q49CA8), PSBD_CYAA5  (B1WQ89), PSBD_CYACA  (Q9TM47), 
PSBD_CYAME  (Q85G27), PSBD_CYAPA  (P48079), PSBD_CYCTA  (A6H5G6), 
PSBD_DAUCA  (Q0G9W7), PSBD_DIOEL  (A6MMK2), PSBD_DRANE  (A4QL14), 
PSBD_DRIGR  (Q06H02), PSBD_EMIHU  (Q4G395), PSBD_EUCGG  (Q49L03), 
PSBD_EUGGR  (P31557), PSBD_FAGEA  (B2XWK0), PSBD_GALSU  (P28253), 
PSBD_GOSBA  (A0ZZ30), PSBD_GOSHI  (Q2L902), PSBD_GRATL  (Q6B918), 
PSBD_GUIAB  (B2LMI8), PSBD_GUITH  (O78427), PSBD_HELAN  (Q1KXW4), 
PSBD_HETA2  (B2XT21), PSBD_HETA4  (B2XTH7), PSBD_HORVU  (P11849), 
PSBD_ILLOL  (A6MMT9), PSBD_IPOPU  (A7Y3C4), PSBD_JASNU  (Q06RD6), 
PSBD_LACSA  (Q56P05), PSBD_LEMMI  (A9L991), PSBD_LEPTE  (A6YG76), 
PSBD_LEPVR  (A4QLA1), PSBD_LIRTU  (Q0G9M4), PSBD_LOBMA  (A4QLI9), 
PSBD_LOLPR  (A8Y9F5), PSBD_LOTJA  (Q9BBT0), PSBD_MAIZE  (P48184), 
PSBD_MANES  (B1NWE5), PSBD_MARPO  (P06404), PSBD_MESVI  (Q9MUW2), 
PSBD_MORIN  (Q09X22), PSBD_NANDO  (Q09FW6), PSBD_NASOF  (A4QLS8), 
PSBD_NEPOL  (Q9TL00), PSBD_NICSY  (Q3C1I4), PSBD_NICTO  (Q33C42), 
PSBD_NOSP7  (B2IVV1), PSBD_NOSS1  (Q8XFA5), PSBD_NUPAD  (Q4FFP2), 
PSBD_NYMAL  (Q6EW53), PSBD_ODOSI  (P49478), PSBD_OENAR  (B0Z4M2), 
PSBD_OENBI  (B0Z4V6), PSBD_OENEH  (Q9MTN1), PSBD_OENGL  (B0Z540), 
PSBD_OENPA  (B0Z5C4), PSBD_OLIPU  (A4QJS8), PSBD_OLTVI  (Q20EU7), 
PSBD_ORYNI  (Q6ENJ1), PSBD_ORYSA  (P0C435), PSBD_ORYSI  (P0C436), 
PSBD_ORYSJ  (P0C437), PSBD_OSTTA  (Q0P3Q0), PSBD_PANGI  (Q68S11), 
PSBD_PAUCH  (B1X3H4), PSBD_PEA    (P06006), PSBD_PELHO  (Q06FW1), 
PSBD_PHAAO  (Q3BAP5), PSBD_PHATC  (A0T097), PSBD_PHAVU  (A4GGA2), 
PSBD_PHYPA  (Q6YXN8), PSBD_PINKO  (Q85WW5), PSBD_PINTH  (P41644), 
PSBD_PIPCE  (Q06GR5), PSBD_PLAOC  (Q09G51), PSBD_POPAL  (Q14FG2), 
PSBD_POPDE  (Q9XQA8), PSBD_POPTR  (A4GYQ4), PSBD_PORPU  (P51357), 
PSBD_PROHO  (P51766), PSBD_PROMM  (Q7V6I0), PSBD_PSEAK  (Q3ZJ46), 
PSBD_PSINU  (Q8WI19), PSBD_PYRYE  (Q1XDD0), PSBD_RANMC  (Q4FFP1), 
PSBD_SACHY  (Q6L3B1), PSBD_SACOF  (Q6ENY1), PSBD_SECCE  (P10803), 
PSBD_SOLBU  (Q2MIJ2), PSBD_SOLLC  (Q2MIA5), PSBD_SOLTU  (Q2VEI1), 
PSBD_SORBI  (A1E9Q9), PSBD_SOYBN  (Q2PMT8), PSBD_SPIOL  (P06005), 
PSBD_STAPU  (Q32RT0), PSBD_STIHE  (Q06SH5), PSBD_SYNE7  (P11005), 
PSBD_SYNJA  (Q2JRJ5), PSBD_SYNJB  (Q2JKT8), PSBD_SYNP2  (P20898), 
PSBD_SYNPW  (A5GMA8), PSBD_SYNPX  (Q7TTI2), PSBD_SYNR3  (A5GQK3), 
PSBD_SYNS3  (Q0I6Z7), PSBD_SYNS9  (Q3B038), PSBD_SYNSC  (Q3AH25), 
PSBD_SYNY3  (P09192), PSBD_THAPS  (A0T0T0), PSBD_THEEB  (Q8CM25), 
PSBD_THEVL  (D0VWR8), PSBD_TOBAC  (P69686), PSBD_TRIEI  (Q116J3), 
PSBD_VITVI  (Q0ZJ25), PSBD_WELMI  (B2Y1U5), PSBD_WHEAT  (Q36814), 
PSBD_ZYGCR  (Q32RM5), RCEL_ACICY  (O66137), RCEL_ACIMU  (O66139), 
RCEL_ACIOR  (O66141), RCEL_ALLVD  (P51762), RCEL_BLAVI  (P06009), 
RCEL_CHLAA  (P11695), RCEL_RHOCA  (P19057), RCEL_RHOPA  (O83005), 
RCEL_RHOPH  (P51750), RCEL_RHORU  (P10717), RCEL_RHOS4  (Q3J1A5), 
RCEL_RHOSH  (P0C0Y8), RCEL_ROSDO  (P26280), RCEL_RUBGE  (P0DJO2), 
RCEL_RUBGI  (I0HUL5), RCEM_ALLVD  (P51763), RCEM_BLAVI  (P06010), 
RCEM_CHLAA  (P09438), RCEM_RHOCA  (P11847), RCEM_RHOPH  (P51751), 
RCEM_RHORU  (P10718), RCEM_RHOS4  (Q3J1A6), RCEM_RHOSH  (P0C0Y9), 
RCEM_ROSDO  (P26279), RCEM_RUBGI  (P51761)
» More

UniProtKB/Swiss-Prot
False negative sequences
7 sequences

PSBA1_SYNJB (Q2JPR2), PSBA2_SYNJA (Q2JTT0), PSBA_AMPCA  (Q9BBC1), 
PSBA_AMPOP  (Q7HP56), PSBD_BPSYR  (Q6H956), PSBD_BPSYS  (Q0QZ08), 
PSBD_BPSYW  (Q6H952)
» More

PDB
[Detailed view]
130 PDB

1AIG; 1AIJ; 1DS8; 1DV3; 1DV6; 1DXR; 1E14; 1E6D; 1F6N; 1FNP; 1FNQ; 1IZL; 1JGW; 1JGX; 1JGY; 1JGZ; 1JH0; 1K6L; 1K6N; 1KBY; 1L9B; 1L9J; 1M3X; 1MPS; 1OGV; 1PCR; 1PRC; 1PSS; 1PST; 1QOV; 1R2C; 1RG5; 1RGN; 1RQK; 1RVJ; 1RY5; 1RZH; 1RZZ; 1S00; 1S5L; 1UMX; 1VRN; 1W5C; 1YF6; 1YST; 1Z9J; 1Z9K; 2AXT; 2BNP; 2BNS; 2BOZ; 2GMR; 2GNU; 2HG3; 2HG9; 2HH1; 2HHK; 2HIT; 2HJ6; 2I5N; 2J8C; 2J8D; 2JBL; 2JIY; 2JJ0; 2PRC; 2RCR; 2UWS; 2UWT; 2UWU; 2UWV; 2UWW; 2UX3; 2UX4; 2UX5; 2UXJ; 2UXK; 2UXL; 2UXM; 2WJM; 2WJN; 2WX5; 2X5U; 2X5V; 3A0B; 3A0H; 3ARC; 3BZ1; 3BZ2; 3D38; 3DSY; 3DTA; 3DTR; 3DTS; 3DU2; 3DU3; 3DUQ; 3G7F; 3I4D; 3KZI; 3PRC; 3PRQ; 3PRR; 3T6D; 3T6E; 3V3Y; 3V3Z; 3ZUM; 3ZUW; 4AC5; 4CAS; 4FBY; 4H99; 4H9L; 4HBH; 4HBJ; 4IL6; 4IN5; 4IN6; 4IN7; 4IXQ; 4IXR; 4JC9; 4JCB; 4N7K; 4N7L; 4RCR; 5PRC; 6PRC; 7PRC
» More

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